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We compare throughput of search queries for both Suns and Erebus, defined as query time divided by number of models in the data set. Suns throughput is measured against a locally hosted server and the Erebus throughput data is taken from [12]. Detailed query information, including the query size in atoms and the number of matches, is provided in Table S3 and the specific query PDB files are included in the benchmark suite of suns-cmd (Software S2).
