Table 2. Identification of enterovirus types and species in captive and wild non-human primates according to their species.

Virusesa	Primate Hosts		Isolation	Highest identity scorec (%)			Identificationd		GenBank accession no.
	Speciesb	living setting		prototype	nt	aa	virus type	virus species
Chimpanzees
CHB2*	Pan t. troglodytes	wild		EV-A76	84.5	93.0	EV-A76	EV-A	KF541633
CHB5*	Pan t. troglodytes	wild		EV-A76	86.2	96.0	EV-A76	EV-A	KF541631
CHB6	Pan t. troglodytes	wild		EV-A76	85.6	97.0	EV-A76	EV-A	KF541649
CHB7	Pan t. troglodytes	wild		EV-A76	85.3	94.9	EV-A76	EV-A	KF541648
CHB8*	Pan t. troglodytes	wild		EV-A76	85.9	95.0	EV-A76	EV-A	KF541632
CHE20	Pan t. troglodytes	wild		EV-J103	61.1	66.4	EV-J121	EV-J	KF541639
Gorillas
GOJ01*	Gorilla gorilla	wild		EV-A92	68.8	69.0	potential new type	EV-A	KF541630
Monkeys
RCMH03	red-capped mangabey	wild		SV6	57.8	52.2	EV-123	candidate new	KF541637
RCMH05	red-capped mangabey	wild		SV6	55.6	53.2	EV-122	candidate new	KF541636
RCMH06	Red-capped mangabey	wild		SV6	56.6	53.2	EV-122	candidate new	KF541638
RCMH07	Mandrillus sphinx	wild		SV6	57.9	52.2	EV-123	candidate new	KF541635
Chimpanzees
Z004	chimpanzee	captive	HEp-2c	CV-A13	73.0	87.7	CV-A13	EV-C	KF541646
Z033*	Pan t. troglodytes	captive		CV-A13	69.0	87.3	CV-A13	EV-C	KF541627
Z034*	Pan t. troglodytes	captive		CV-A13	69.3	87.3	CV-A13	EV-C	KF541628
Z035*	Pan t. troglodytes	captive		CV-A13	69.3	87.3	CV-A13	EV-C	KF541629
Z036	Pan t. troglodytes	captive	HEp-2c	CV-A13	73.3	87.7	CV-A13	EV-C	KF541645
Z108-1&	Pan t. troglodytes	captive	HEp-2c	CV-A13	73.3	87.7	CV-A13	EV-C	KF541647
Z046	Pan t. troglodytes	captive		EV-A119	95.7	98.7	EV-A119	EV-A	KF541634
Z055	Pan t. troglodytes	captive	RD	E-29	80.6	95.9	E-29	EV-B	KF541644
Z110*	Pan t. troglodytes	captive		E-15	79.8	95.4	E-15	EV-B	KF541626
Gorillas
Z052	Gorilla gorilla	captive		CV-A24	78.3	89.5	CV-A24	EV-C	KF541640
Z097	Gorilla gorilla	captive	HEp-2c	E-15	78.9	90.8	E-15	EV-B	KF541641
Z098-1*&	Gorilla gorilla	captive		EV-B82	81.6	91.5	EV-B82	EV-B	KF541625
Z098-2&	Gorilla gorilla	captive		EV-A71	79.4	94.3	EV-A71	EV-A	KF700265
Z099	Gorilla gorilla	captive		EV-A71	79.4	94.3	EV-A71	EV-A	KF700264
Monkeys
Z057	Mandrillus sphinx	captive	HEp-2c and Vero	SA5	82.1	92.9	SA5	EV-B	KF541643
Z088	Mandrillus sphinx	captive	HEp-2c and RD	E-29	80.5	95.6	E-29	EV-B	KF541642

^aViruses from wild primates are abbreviated in the following format: two letters code standing for the primate species identified in the field (CH, chimpanzee; GO, gorilla; RCM, red-capped mangabey), followed by one later (from B to J) corresponding to the round of sample collection on the field and the serial number of the stool sample. Viruses from captive primates are abbreviated using the letter “Z” standing for Zoo, followed by the serial number of the stool sample. For samples containing 2 viruses, “−1” and “−2” were used to distinguish among each others. Viruses specified with an asterisk (*) have been typed using partial VP1 sequences.

^bSpecies designated with scientific names were confirmed by the analysis of a portion of simian mitochondrial DNA sequences; Pan t. troglodytes, Pan troglodytes troglodytes.

^cnt, nucleotides; aa, amino acids ; SA5, simian picornavirus 17.

^dCandidates new types discovered in this study are highlighted in bold.

^&Chimpanzee sample Z108 contained two isolates Z108-1 (CV-A13) and a potentially divergent EV-A (Z108-2) which could be sequenced only in the 3D^pol region; the gorilla sample Z098 contained two isolates Z098-1 (EV-B82) and Z098-2 (EV-A71).