Table 4.
Case 1 | M. truncatula | Arabidopsis | ||||||
---|---|---|---|---|---|---|---|---|
PAC# | PAT# | PAC% | Gene pair# | PAC# | PAT# | PAC% | Gene pair# | |
1 | 1743 | 99321 | 30 | 1014 | 9045 | 780712 | 49 | 5325 |
2 | 535 | 41069 | 9 | 282 | 2059 | 67714 | 11 | 1288 |
3 | 1562 | 30389 | 27 | - | 4808 | 12220 | 26 | - |
4 | 1661 | 7279 | 29 | - | 2552 | 6064 | 14 | - |
Total | 5531 | 177758 | 100 | 1296 | 18464 | 863710 | 100 | 6613 |
1Cases 1–4 are as described in Wu et al. [7]. Specifically:
Case 1 – antisense PACs map to the 3′-UTR of an adjacent, convergently-transcribed gene.
Case 2 – antisense PACs map to the CDS or 5′-UTR of an adjacent, convergently-transcribed gene.
Case 3 – antisense PACs are near the end of an adjacent, convergently-transcribed gene, but do not map to the nearby annotated gene.
Case 4 – antisense PACs cannot be attributed to an adjacent, convergently-transcribed gene.