Table 1.
Features of Stachybotrys genome and proteome assemblies
| S. chlorohalonata 40285 | S. chartarum 40288 | S. chartarum 40293 | S. chartarum 7711 | F. graminearum PH-1 | |
|---|---|---|---|---|---|
| NCBI Acc. # | APWP00000000 | AQPQ00000000 | ASEQ00000000 | APIU00000000 | AACM00000000 |
| Paired reads [×10 6 ] | 66.4 | 58.6 | 68.8 | 71.4 | NA |
| Assembled sequences | 1246 | 957 | 826 | 897 | 36 |
| Assembly size [Mbp] | 34.2 | 36.5 | 36.1 | 36.2 | 36.2 |
| Fold coverage | 196 | 162 | 192 | 199 | 10 |
| N 50 length [kbp] | 116 | 130 | 214 | 177 | 5350 |
| Assembly gaps [Mbp] | 0.25 | 0.08 | 0.16 | 0.13 | 0.22 |
| Repeat content [%] | 1.62 | 0.93 | 0.93 | 1.01 | 0.66 |
| Gene content [%] | 51.75 | 53.42 | 53.19 | 53.31 | 57.18 |
| Coding genes [predicted] | 10866 | 11719 | 11532 | 11543 | 13332 |
| Median gene length [bp]/protein length [aa] | 1357/403 | 1377/411 | 1380/412 | 1379/413 | 1259/375 |
| Mean exons per gene | 2.8 | 2.8 | 2.8 | 2.8 | 2.8 |
| Median: exon length [bp]/intron length [bp] | 293/59 | 296/59 | 297/59 | 296/59 | 255/55 |
| Predicted products with identified CDD domain [%] | 65.87 | 65.84 | 66.29 | 65.94 | 61.43 |
Stachybotrys assemblies include all contigs and scaffolds of at least 1-kbp. N50 is the sequence that includes the middle nucleotide of the assembly when the sequences are ordered by length.