Table 2.
List of LAMP primers used in this report.
| Target | Primer | Sequence (5′–3′) | Reference |
|---|---|---|---|
| MS2 phage (MS-2) | F3 | TGTCATGGGATCCGGATGTT | This study |
| B3 | CAATAGAGCCGCTCTCAGAG | ||
| FL | CCAGAGAGGAGGTTGCCAA | ||
| BL | TGCAGGATGCAGCGCCTTA | ||
| FIP | GCCCAAACAACGACGATCGGTAAAACCAGCATCCGTAGCCT | ||
| BIP | GCACGTTCTCCAACGGTGCTGGTTGCTTGTTCAGCGAACT | ||
| Swine influenza virus (SIV) H1N1 | F3 | ATCATCCCGTCAGGCCCCCTCA | This study |
| B3 | TACGCTGCAGTCCTCGCTCACTGG | ||
| FL | TGTCTTTGCAGGAAAGAAC | ||
| BL | TCTGACTAAGGGAATTTTAGGAT | ||
| FIP | CCATGAGAGCCTCAAGATCAAGCCGAGATCGCACAGA | ||
| BIP | GACAAGACCAATCCTGTCACCACGGTGAGCGTGAACACAA | ||
| Porcine circovirus-2 (PCV-2) | F3 | CACTTCGTAATGGTTTTTATTATTTA | Zhao et al., 2011 |
| B3 | TCCACTATTGATTACTTCCAAC | ||
| FL | AACCATGTATGTACAATTCAGAGAATTTAATC | ||
| BL | TTCCAGCAGTTTGTAGTCTCAGC | ||
| FIP | CAGGAATACAATATCCGTGTAACCATTTTGGTTAAGTGGGGGGTCTT | ||
| BIP | GAGGCCTACGTGGTCTACATTTTTCAAACAACAAAAGAAATCAGCTATG | ||
| West Nile virus (WNV)—NY 2001-6263 | F3 | TGGATTTGGTTCTCGAAGG | This study |
| B3 | GGTCAGCACGTTTGTCATT | ||
| FL | CATCGATGGTAGGCTTGTC | ||
| BL | TCTCCACCAAAGCTGCGT | ||
| FIP | TTGGCCGCCTCCATATTCATCATTTTCAGCTGCGTGACTATCATGT | ||
| BIP | TGCTATTTGGCTACCGTCAGCGTTTTTGAGCTTCTCCCATGGTCG | ||
| Edwardsiella ictaluri | F3 | CGGCGAAAATCATACCCCT | This study |
| B3 | ACCCGACAGACAGAGGAAAG | ||
| FL | GGCAAGAGAGGACGACCACGATA | ||
| BL | CAGAGACAAGCACGGCGAGTG | ||
| FIP | ATTGTTGGATGCCCTCCCGGGTCTGCGTGTAGCTTGTCA | ||
| BIP | TCGAGTCATGGCGATTGGCTCCGACACATAGTGGTGGAACG | ||
| Bacillus atrophaeus (BAT) | F3 | GTCGCCTAAATGAAGTGC | This study |
| B3 | GGATAGCGATGAAGAAAGGAC | ||
| FL | AGGTGAAAATGAAGTAGG | ||
| BL | AAAACGTACGTCAACGA | ||
| FIP | CGATTAAAGTTTCACAACCAGCAACGACCTCTAGCGTTAAATCGA | ||
| BIP | ATTTCAGGTAAGTGACCGTCTTCCGTTAGCCAAGTAATGGGAC | ||
| Staphylococcus aureus MSSA | F3 | TCGAACAGTGACACAACG | This study |
| B3 | TCTTCTTTCGTATAAAAAGGACC | ||
| FL | CCTATCATACCCTGTGACATT | ||
| BL | ACACGTGTGGAAGTAGATAA | ||
| FIP | GCGATTGATTTCAGTTTCCAACCCATTGGATACTTGTGGTGC | ||
| BIP | AGTGATAGAACTGTAGGCACAATCGTTATCAAATCGTGGATCATCT | ||
| Ebola virus—Zaire | F3 | ATGGGCTGAAAACTGCTACA | This study |
| B3 | CAGCGAAAGTCGTTCCTCG | ||
| FL | GTCTGGCGCTGCTGGTAGAC | ||
| BL | CCTTCCACAAAGAGGGTG | ||
| FIP | TTGTGCACATACCGGCACCGAAAAAACCTGACGGGAGTGA | ||
| BIP | GACCGTGTGCCGGAGACTTTGTGGAAGCAAGTCGATCAT | ||
| Crimean-Congo hemorrhagic fever virus (CCHFV) | F3 | AGGTGGTTTGAAGAGTTCA | This study |
| B3 | ACAAAACTTTGTTGCCTCC | ||
| FL | ATAGGAGTTTGTGAAGGTGT | ||
| BL | CCGATGATGCACAGAAGG | ||
| FIP | TGGGAACACTCTCGCAAAAGGAAAAAGGAAATGGACTTGTGG | ||
| BIP | TGTGTTTCAGATGGCCAGTGCCGAGCAGATGCGTAGATGGAG | ||
| Bovine viral diarrhea virus (BVDV)—type I | F3 | GCGAAGGCCGAAIAGAGG | Koelbl et al., in preparation |
| B3 | TITGGGCITGCCCTCG | ||
| BL | CAGGGTAGTCGTCAGTGGTTC | ||
| FIP | CICCACTGITGCTACCCICCTAICCATGCCCTTAGTAGG | ||
| BIP | CGTTGGATGGCTIAAGCCCTGAGTCCACITGGCATCTCG |