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. 2014 Jun 9;13(8):3679–3684. doi: 10.1021/pr500202e

Figure 3.

Figure 3

Performance comparison of identified PSMs in a histone data set. We used four different histone preparations originating from three species and measured them on a Thermo Fisher QExactive mass spectrometer. HCD raw files were combined for peptide identification. At 1% FDR, we identified more PSMs with MS Amanda as with Mascot and SEQUEST.