Table 5.
Effects of varying ratio of input control (C) to ARK1_3738 ChIP-seq (S) in MACS1.4 ChIP-seq peak calling.
| C/S ratio | 0 :1 | 0.5 : 1 | 1 : 1 | 1.5 : 1 |
|---|---|---|---|---|
| #reads (S) | 67,680,143 | 67,680,143 | 67,680,143 | 67,680,143 |
| #reads (C) | 0 | 34,232,969 | 68,470,396 | 103,734,004 |
| #peaks | 19198 | 13961 | 15683 | 16526 |
| mean width | 704.9477 | 821.5005 | 794.4457 | 779.2845 |
| mean score | 498.1456 | 447.5715 | 535.8703 | 528.0994 |
#reads was the total number of filtered reads passed into Bowtie2, "S" was the ChIP-seq sample, and "C" was the input control.