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. Author manuscript; available in PMC: 2015 Jan 1.
Published in final edited form as: Int J Bioinform Res Appl. 2014;10(4):479–497. doi: 10.1504/IJBRA.2014.062996

Table 2.

Expression profile of the gene cluster C19. The shaded cells in the table indicate the genes that are highly expressed in male Drosophila

Expression profile
FlyBase ID CG ID Symbol modENCODE 1 FlyAtlas 2 FlyTED 3
Adult males
5 days 		Adult females
5 days 		Testis Ovary Spermatogenesis
FBgn0004403 CG1524 RpS14a 32115 53897 705 2785 n.d.
FBgn0010316 CG1772 dap 309 1813 45 1117 n.d.
FBgn0028487 CG9611 f-cup 5786 755 1419 148 Cup
FBgn0029809 CG15767 CG15767 734 0 134* 1 n.d.
FBgn0031142 CG10998 r-cup 2008 14 n.d. n.d. Cup
FBgn0031546 CG8851 CG8851 4241 2 n.d. n.d. n.d.
FBgn0032176 CG13127 CG13127 360 0 175* 1 n.d.
FBgn0033848 CG13330 CG13330 n.d. n.d. 895* 3 n.d.
FBgn0034374 CG15086 CG15086 5501 0 1237* 2 n.d.
FBgn0036687 CG6652 CG6652 9250 6 1544* 2 Spermatocytes
FBgn0038170 CG14367 CG14367 1889 364 29 11 n.d.
FBgn0038225 CG8489 soti 6762 0 143* 2 Comet
FBgn0038499 CG31256 Brf 470 932 9 94 n.d.
FBgn0038683 CG11779 CG11779 4905 2739 n.d. n.d. n.d.
FBgn0062517 CG16984 CG16984 6630 230 1393* 3 n.d.
FBgn0086358 CG7417 Tab2 1554 3470 87 382 n.d.
FBgn0250827 CG34218 whip 5358 1 n.d. n.d. Comet
FBgn0261799 CG32159 dsx-c73A n.d. n.d. n.d. n.d. n.d.
FBgn0262515 CG8029 VhaAC45 n.d. n.d. n.d. n.d. n.d.
FBgn0262740 CG11727 CG 11727 n.d. n.d. n.d. n.d. n.d.

Notes:

1

modENCODE RNA-Seq data were downloaded from Flybase (average RNA-Seq RPKM reported in FlyBase Annotation Release 5.26).

2

FlyAtlas microarray expression data were downloaded from FlyBase (Annotation Release 5.26).

3

RNA tissue in situ hybridisation data obtained from Fly-TED.

*

Genes with strong expression are confined to the testis and low expression in the fat body.

Sources: Graveley et al. (2011); Chintapalli et al. (2007); Zhao et al. (2010)