TABLE 4.
Coding regions of the insert of pLIND33 of S. paucimobilis B90A
| Protein | Length (amino acids) | % Identity/% similarity | Putative function | Best hit Bacterium (accession no.) |
|---|---|---|---|---|
| ORF1 | 385 | 45/60 | Hypothetical TonB-dependent receptor); pfam00593, TonB_dep_Rec, TonB-dependent receptor | Novosphingobium aromaticivorans (gi 23107064) |
| LinR | 303 | 99/99 | LysR-type transcriptional regulator for linD | Sphingomonas paucimobilis UT26 (gi 4092848) |
| LinE | 321 | 100/100 | Hydroquinone meta-cleavage dioxygenase | Sphingomonas paucimobilis UT26 (gi 4587228) |
| ORF2 | 269 | 35/51 | β-Ketoadipate-enol-lactone hydrolase; pfam00561, abhydrolase, alpha/beta hydrolase fold | Ralstonia solanacearum (gi 17427307) |
| ORF3 | 238 | 26/42 | Carboxylesterase; pfam02230, abhydrolase_2, phospholipase/carboxylesterase | Burkholderia fungorum (gi 22989674) |
| ORF4 | 210 | 33/47 | Conserved hypothetical protein; COG2350, uncharacterized protein conserved in bacteria | Ralstonia eutropha (gi 11967267) |
| LinD | 346 | 99/100 | 2,5-Dichlorohydroquinone reductive dechlorinase | Sphingomonas paucimobilis UT26 (gi 1731852) |
| TnpA5 | 264 | 100/100 | Transposase of IS6100 (COG3316, transposase and inactivated derivatives) | Aeromonas salmonicida (CAD57187) |
| ORF5 | 69 | 45/59 | Multidrug resistance protein VceB (truncated, only C-terminal portion) | Vibrio cholerae (gi 2815578) |