Table 4. Haplotype association analysis of Block 1 and Block 3 with BH, BL, CBC and RC.

Traits	Hap	Global p-val1	Type	SNP	Hap-Freq2	Hap-Score3	p-val4
BH	Block1	<1E-5	Haplo1	CGGAAGA	0.52805	−8.36169	<1E-5
			Haplo2	AAAGCAG	0.29651	10.40761	<1E-5
	Block3	<1E-5	Haplo1	AAGG	0.50977	−8.40519	<1E-5
			Haplo2	GGAA	0.3314	9.77698	<1E-5
BL	Block1	<1E-5	Haplo1	CGGAAGA	0.52805	−9.1758	<1E-5
			Haplo2	AAAGCAG	0.29651	12.02618	<1E-5
	Block3	<1E-5	Haplo1	AAGG	0.50977	−9.6648	<1E-5
			Haplo2	GGAA	0.3314	11.84945	<1E-5
CBC	Block1	0.01378	Haplo1	CGGAAGA	0.52805	−2.82456	0.00473
			Haplo2	AAAGCAG	0.29651	3.13383	0.00173
	Block3	0.00351	Haplo1	AAGG	0.50977	−2.9837	0.00285
			Haplo2	GGAA	0.3314	3.23023	0.00124
RC	Block1	1E-05	Haplo1	CGGAAGA	0.52805	−3.99267	7E-5
			Haplo2	AAAGCAG	0.29651	5.15674	<1E-5
	Block3	<1E-5	Haplo1	AAGG	0.50977	−4.33596	1E-5
			Haplo2	GGAA	0.3314	5.19853	<1E-5

¹The overall association between haplotypes and the response.

²Estimated frequency of each haplotype in the population.

³The score for the haplotype, which is the statistical measurement of association of each specific haplotype with the trait.

⁴The asymptotic chi-square P-value was calculated from the square of the score statistic.