Fig. 1.

A comparison of the interaction parameters determined for the optimized globular and α-helical membrane protein potentials. The globular interaction parameters (Upper) and membrane interaction parameters (Lower) are shown. For each potential, all three interaction classes are shown: direct, high-density mediated, and low-density mediated. Residue types are ordered by their hydrophobicity, and the strength of interaction is indicated by color with blue being the most destabilizing and red the most stabilizing.