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. 2014 Jun 29;9:17. doi: 10.1186/1748-7188-9-17

Table 2.

The results of binding sites prediction of GRNAs in sensitivity and positive predictive value on the datasets[12,14]in comparison to inRNAs, IntaRNA, RNAup and RactIP

Sensitivity
 PPV
RNA-RNA pairs GRNAs inRNAs IntaRNA RNAup RactIP GRNAs inRNAs IntaRNA RNAup RactIP
Tar-Tar*
 100
 100
 100
 100
 81.5
 100
 83.3
 83.3
 83.3
 57.9
R1inv-R2inv
 100
 100
 100
 100
 100
 100
 77.8
 100
 77.8
 100
DIS-DIS
 100
 100
 100
 100
 75
 100
 100
 100
 100
 78.3
CopA-CopT
 89.47
 88.9
 100
 55.6
 100
 80.95
 82.8
 39.1
 65.2
 100
IncRNA54-RepZ
 71.44
 100
 73.8
 75
 100
 100
 88.9
 85
 85.7
 83.3
DsrA-Rpos
 73.08
 80.8
 80.8
 80.8
 65.4
 100
 77.8
 77.8
 77.8
 73.9
GcvB-argT
 87.5
 95
 95
 90
 95
 100
 86.4
 95
 94.7
 100
GcvB-dppA
 94.12
 100
 100
 100
 94.1
 100
 85
 58.6
 45.9
 59.3
GcvB-gltI
 91.67
 75
 0
 0
 100
 95.65
 50
 0
 0
 100
GcvB-livK
 70.83
 54
 54.2
 54.2
 95.5
 89.47
 57
 56.5
 56.5
 95.5
GcvB-livJ
 95.45
 63.4
 95.5
 95.5
 95.8
 95.45
 82.4
 95.5
 95.5
 95.8
GcvB-oppA
 90.91
 100
 100
 100
 100
 100
 73.3
 95.7
 95.7
 100
GcvB-STM4351
 72
 76
 76
 88
 88
 100
 100
 90.5
 95.7
 100
IstR-tisAB
 69.44
 72.2
 87.9
 66.7
 77.8
 100
 100
 96
 100
 100
MicA-ompA
 93.75
 100
 100
 100
 87.5
 100
 100
 100
 100
 87.5
MicA-lamB
 82.61
 100
 100
 82.6
 56.5
 90.48
 100
 82.1
 70.4
 86.7
MicC-ompC
 90.91
 100
 100
 72.7
 72.7
 100
 100
 53.7
 41
 88.9
MicF-ompF
 100
 96
 96
 80
 83.3
 100
 96
 96
 95.2
 76.9
OxyS-fhlA
 80
 81.3
 50
 37.5
 56.3
 86.96
 100
 100
 100
 81.8
RyhB-sdhD
 58.82
 61.8
 58.8
 79.4
 82.4
 95.24
 95.5
 100
 79.4
 82.4
RyhB-sodB
 100
 100
 100
 100
 100
 100
 100
 81.8
 90
 39.1
SgrS-ptsG
 60.87
 56.6
 73.9
 73.9
 83.9
 87.5
 76.5
 100
 100
 100
Spot42-galK
 61.36
 43.2
 40.9
 52.3
 68.2
 87.1
 76
 64.3
 52.3
 69.8
Average 84.1 84.5 81.9 77.6 84.7 96.03 86.5 80.5 78.4 85.1