Table 6.
dN/dS ratios for various OR protein domains
Family D | Entire molecule | ||||
---|---|---|---|---|---|
32 genes | 0.44±0.10 | TM1 | 0.28±0.18 | IN1 | 0.36±0.33 |
TM2 | 0.24±0.23 | IN2 | 0.69±0.72 | ||
TM3 | 0.64±0.46 | IN3 | 0.26±0.26 | ||
TM4 | 0.83±1.01 | OUT1 | 0.22±0.22 | ||
TM5 | 0.58±0.39 | OUT2 | 1.14±1.06 | ||
TM6 | 0.42±0.41 | OUT3 | 0.80±0.56 | ||
TM7 | 0.36±0.35 | ||||
Family E | Entire molecule | ||||
56 genes | 0.40±0.11 | TM1 | 0.57±0.27 | IN1 | 0.24±0.01 |
TM2 | 0.52±0.48 | IN2 | 0.42±0.37 | ||
TM3 | 0.73±0.79 | IN3 | 0.32±0.37 | ||
TM4 | 0.69±0.39 | OUT1 | 0.43±0.24 | ||
TM5 | 0.70±0.44 | OUT2 | 0.30±0.23 | ||
TM6 | 0.23±0.21 | OUT3 | 0.41±0.38 | ||
TM7 | 0.21±0.12 | ||||
Family H | Entire molecule | ||||
50 genes | 0.41±0.13 | TM1 | 0.56±0.47 | IN1 | 0.35±0.24 |
TM2 | 0.24±0.22 | IN2 | 0.23±0.15 | ||
TM3 | 0.48±0.43 | IN3 | 0.34±0.24 | ||
TM4 | 0.53±0.39 | OUT1 | 0.39±0.51 | ||
TM5 | 0.76±0.68 | OUT2 | 0.64±0.36 | ||
TM6 | 0.84±0.51 | OUT3 | 0.67±0.72 | ||
TM7 | 0.27±0.29 | ||||
Family L | Entire molecule | ||||
32 genes | 0.50±0.12 | TM1 | 0.56±0.42 | IN1 | 0.23±0.11 |
TM2 | 0.59±0.58 | IN2 | 0.41±0.38 | ||
TM3 | 0.76±0.43 | IN3 | 0.59±0.33 | ||
TM4 | 1.48±1.54 | OUT1 | 0.29±0.34 | ||
TM5 | 0.63±0.36 | OUT2 | 0.35±0.22 | ||
TM6 | 0.72±0.42 | OUT3 | 0.40±0.34 | ||
TM7 | 0.56±0.58 | ||||
Family N | Entire molecule | ||||
32 genes | 0.39±0.14 | TM1 | 0.45±0.35 | IN1 | 0.57±0.35 |
TM2 | 0.79±0.37 | IN2 | 0.60±0.55 | ||
TM3 | 0.68±0.57 | IN3 | 0.41±0.33 | ||
TM4 | 0.95±0.54 | OUT1 | 0.35±0.27 | ||
TM5 | 0.56±0.41 | OUT2 | 0.24±0.11 | ||
TM6 | 0.60±0.41 | OUT3 | 0.40±0.13 | ||
TM7 | 1.20±1.07 |
dN/dS ratios for the 7 TM regions, and the 3 external and 3 internal loops for the 4 largest families were calculated. TM regions and loops were identified with PolyPhobius.