Table 1.
Sequencing and Assembly Summaries
| Brain | Olfactory epithelium | Pituitary | Pooled | |
|---|---|---|---|---|
| Reads after trimming for primers and quality | ||||
| Number of reads | 1,013,257 | 443,891 | 835,301 | 2,292,449 |
| Number of nucleotides | 296,269,397 | 118,962,788 | 211,332,527 | 626,564,712 |
| Mean read length ± SD (bp) | 292 ± 115 | 268 ± 106 | 253 ± 104 | 273 ± 111 |
| Assembly | ||||
| Isogroups | 16,885 | 13,162 | 19,418 | 34,005 |
| Mean isotig count per isogroup | 1.8 | 1.2 | 1.5 | 1.7 |
| Isotigs | 23,035 | 15,605 | 24,093 | 45,248 |
| Mean isotig length | 1,064 ± 708 | 683 ± 330 | 788 ± 456 | 995 ± 692 |
| Mean contigs per isotig | 1.9 | 1.4 | 1.6 | 1.8 |
| Median contig length (lower/upper quartile) | 516 (243/868) | 526 (324/693) | 486 (281/757) | 494 (235/840) |
| Contig N50 (N25/N75) | 924 (578/1,439) | 650 (467/885) | 748 (493/1,100) | 905 (558/1,393) |
| Median contig length (lower/upper quartile) | 516 (243/868) | 526 (324/693) | 486 (281/757) | 494 (235/840) |
| Median read depth per contig (lower/upper quartile) | 5 (3.6/8.6) | 5.5 (4/9) | 5.4 (3.8/8.8) | 6.1 (4/11.6) |
Note.—Full assembly statistics can be found in supplementary section S1, Supplementary Material online.