Skip to main content
. Author manuscript; available in PMC: 2014 Aug 6.
Published in final edited form as: Amyloid. 2009 Mar;16(1):1–8. doi: 10.1080/13506120802676781

Table II.

Results of property-based statistical analysis and substitution list for Vκ1 family.

Region Position (IMGT) Property Germline residue Substitutions

AL-PCD (n = 91) Other PCD (n = 53)
FR1 3 FX, HY, SA Q/W R, E(3), V(7) R(2)
17 pI D A, N, G(2)
18 BS, FX R K, G(2), N(2), T(2), S(4) Y, T(3), V(5)
24 SA, VM R/Q/W R, L(2), H(2) R(3)
26 FX S T, N(4) R(2)
CDR1 30 BS S K, V, T, I, H(2), A(2), D(3), R(4), T(5), G(8), N(18) V, K, S, R(2), T(2), L(3), N(3), G(5), I(5), A(5)
31 HY, FX, VM S/N E, A, R(2), Y(2), I(4), K(5), N(6), D(6), T(12) R, Y, H, S(2), K(3), N(3), D(4), T(4), G(5)
FR2 42 FX, HY, SA Y W, L(3), F(4) H, F(2)
47 pI, SA G/E A
52 FX L/S I(2), F(3), V(5) E, A, C, P, F(2), V(5)
CDR2 56 BS, FX A/D/K A, N, P, E(2), D(3), S(5), G(11) V, K, N, T, S(2), A(3), G(3), E(4), D(4)
FR3 67 BS L F, M, V(2)
68 FX Q/E K, L, A, R, E, I, D, Q(5) A, R, Q(2), E(3), L(3), H(3)
69 BS S/T K, T, N, P, R(2), A(3), I(3), G(4) K, P, N(2), A(2), S(2), R(2), G(3), I(3)
72 HY, pI, SA, VM P T, A(2), S(6) T
75 BS, pI, SA, VM R I, T, H, S(2), K(5), N(9) M
86 FX, pI D/E R, G(2), E(7), H(7), N(14) N, Y, V(2), D(2), E(2)
88 VM T Y, S(3), I(3), N(6) A(2), S(4)
97 VM D/E A, G(2), D(5) V, D, E
103 pI, VM Y S(2), F(3), H(4) F(2)
CDR3 107 BS, FX, VM S/Y/A F, G, T Y, N, D, E, I, H, R, G(2), T(2), S(3)
108 BS Y/D/N T, R, F, Q, A(2), D(3), K(3), N(3), E(3), H(3), Y(5), S(8) Y, I, E, Q(2), T(2), S(3), N(3), H(4)
109 FX S/N R, Y, I, H, K(2), F(2), N(4), S(5), D(10), T(14) N, C, F, G, R(3), T(5), D(6), S(7)

HY, modified Kyte-Doolittle hydrophobicity scale; FX, average flexibility index; VM, average volume of residue; SA, average accessible surface area; pI, isoelectric point; BS, conformational parameter of beta-structure.

Property values identified to be significantly different between the AL-PCD and other-PCD groups.