Table II.
Results of property-based statistical analysis and substitution list for Vκ1 family.
Region | Position (IMGT) | Property★ | Germline residue | Substitutions | |
---|---|---|---|---|---|
| |||||
AL-PCD (n = 91) | Other PCD (n = 53) | ||||
FR1 | 3 | FX, HY, SA | Q/W | R, E(3), V(7) | R(2) |
17 | pI | D | A, N, G(2) | – | |
18 | BS, FX | R | K, G(2), N(2), T(2), S(4) | Y, T(3), V(5) | |
24 | SA, VM | R/Q/W | R, L(2), H(2) | R(3) | |
26 | FX | S | T, N(4) | R(2) | |
CDR1 | 30 | BS | S | K, V, T, I, H(2), A(2), D(3), R(4), T(5), G(8), N(18) | V, K, S, R(2), T(2), L(3), N(3), G(5), I(5), A(5) |
31 | HY, FX, VM | S/N | E, A, R(2), Y(2), I(4), K(5), N(6), D(6), T(12) | R, Y, H, S(2), K(3), N(3), D(4), T(4), G(5) | |
FR2 | 42 | FX, HY, SA | Y | W, L(3), F(4) | H, F(2) |
47 | pI, SA | G/E | A | – | |
52 | FX | L/S | I(2), F(3), V(5) | E, A, C, P, F(2), V(5) | |
CDR2 | 56 | BS, FX | A/D/K | A, N, P, E(2), D(3), S(5), G(11) | V, K, N, T, S(2), A(3), G(3), E(4), D(4) |
FR3 | 67 | BS | L | F, M, V(2) | – |
68 | FX | Q/E | K, L, A, R, E, I, D, Q(5) | A, R, Q(2), E(3), L(3), H(3) | |
69 | BS | S/T | K, T, N, P, R(2), A(3), I(3), G(4) | K, P, N(2), A(2), S(2), R(2), G(3), I(3) | |
72 | HY, pI, SA, VM | P | T, A(2), S(6) | T | |
75 | BS, pI, SA, VM | R | I, T, H, S(2), K(5), N(9) | M | |
86 | FX, pI | D/E | R, G(2), E(7), H(7), N(14) | N, Y, V(2), D(2), E(2) | |
88 | VM | T | Y, S(3), I(3), N(6) | A(2), S(4) | |
97 | VM | D/E | A, G(2), D(5) | V, D, E | |
103 | pI, VM | Y | S(2), F(3), H(4) | F(2) | |
CDR3 | 107 | BS, FX, VM | S/Y/A | F, G, T | Y, N, D, E, I, H, R, G(2), T(2), S(3) |
108 | BS | Y/D/N | T, R, F, Q, A(2), D(3), K(3), N(3), E(3), H(3), Y(5), S(8) | Y, I, E, Q(2), T(2), S(3), N(3), H(4) | |
109 | FX | S/N | R, Y, I, H, K(2), F(2), N(4), S(5), D(10), T(14) | N, C, F, G, R(3), T(5), D(6), S(7) |
HY, modified Kyte-Doolittle hydrophobicity scale; FX, average flexibility index; VM, average volume of residue; SA, average accessible surface area; pI, isoelectric point; BS, conformational parameter of beta-structure.
Property values identified to be significantly different between the AL-PCD and other-PCD groups.