Table 2.
COG functional classification of S. caninervis transcripts
| Description | Code | Unigenes (n) |
|---|---|---|
|
Information storage and processing |
|
|
| RNA processing and modification |
A |
125 |
| Chromatin structure and dynamics |
B |
342 |
| Translation, ribosomal structure and biogenesis |
J |
4,202 |
| Transcription |
K |
2,927 |
| Replication, recombination and repair |
L |
2,876 |
|
Cellular processing and signaling |
|
|
| Cell cycle control, cell division, chromosome partitioning |
D |
1,812 |
| Cell wall/membrane/envelope biogenesis |
M |
1,774 |
| Cell motility |
N |
348 |
| Posttranslational modification, protein turnover, chaperones |
O |
2,825 |
| Signal transduction mechanisms |
T |
2,069 |
| Intracellular trafficking, secretion, and vesicular transport |
U |
1,249 |
| Defense mechanisms |
V |
477 |
| Extracellular structures |
W |
19 |
| Nuclear structure |
Y |
9 |
| Cytoskeleton |
Z |
496 |
|
Metabolism |
|
|
| Energy production and conversion |
C |
1,782 |
| Amino acid transport and metabolism |
E |
1,584 |
| Nucleotide transport and metabolism |
F |
447 |
| Carbohydrate transport and metabolism |
G |
2,573 |
| Coenzyme transport and metabolism |
H |
685 |
| Lipid transport and metabolism |
I |
1,247 |
| Inorganic ion transport and metabolism |
P |
1,126 |
| Secondary metabolites biosynthesis, transport and catabolism |
Q |
932 |
|
Poorly characterized |
|
|
| General function prediction only |
R |
5,211 |
| Function unknown | S | 2,619 |
n = number of unigenes.