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Assembly quality metrics
|
Assembly Statistic |
Assembler |
|||
|---|---|---|---|---|
| Oases | Trinity | Velvet | Geneious | |
| Number of contigs |
3 090 |
10 886 |
78 306 |
112 762 |
| Average contig length |
175 |
293 |
111 |
140 |
| Longest contig |
1 700 |
1 618 |
458 |
711 |
| N50 | 149 | 258 | 107 | 124 |
Assembly statistics for the transcriptomes produced by the four different short read de novo assemblers.
