Table 1. Summary and statistics of the curated base-pair step parameter sets.
| DNA | RNA | |||||
| Default | 2.8_all | 2.0_noprot | default | 2.8_all | 2.0_noprot | |
| # of data | 2964 | 32261 | 1456 | 4503 | 28397 | 1404 |
| Resolution cutoff | 2.8 | 2.8 | 2.0 | 2.8 | 2.8 | 2.0 |
| Contain proteins? | N | Y | N | N | Y | N |
| k-means clustering?1 | Y | N | Y | N | N | N |
| Shift (Å)2 | 0.00(0.57) | 0.00(0.64) | 0.03(0.59) | 0.00(0.57) | 0.05(0.66) | −0.02(0.60) |
| Slide (Å) | 0.32(0.86) | −0.12(0.82) | 0.35(0.92) | −1.58(0.39) | −1.62(0.44) | −1.58(0.41) |
| Rise (Å) | 3.30(0.23) | 3.30(0.25) | 3.29(0.21) | 3.22(0.20) | 3.25(0.24) | 3.23(0.16) |
| Tilt (degree) | −0.05(3.56) | 0.03(3.85) | 0.08(3.36) | 0.02(2.86) | 0.13(3.51) | −0.09(2.47) |
| Roll (degree) | 1.60(5.17) | 3.03(6.25) | 1.76(5.53) | 7.89(4.33) | 7.71(5.20) | 8.18(4.06) |
| Twist (degree) | 35.21(6.24) | 33.87(5.42) | 35.18(6.44) | 31.72(4.25) | 31.78(4.73) | 31.69(4.36) |
1
For removing A-DNA conformation. Only for DNA parameter sets.
2
First value is the mean of that parameter; second value in the parenthesis is the corresponding standard deviation.