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. 2014 Mar 19;30(14):2009–2017. doi: 10.1093/bioinformatics/btu156

Fig. 3.

Fig. 3.

Computation of LMs for Melitaea cinxia U6 snRNA JX878560.1 (107 nt) with RNAlocmin. (Left) Adaptive ξ schedule as a function of run time. For each sampling epoch we show the values of e and ξ as Inline graphic. The precomputed Inline graphic table is shown at the top. (Right) Size-weighted fraction of undiscovered LMs compared with exhaustive enumeration with RNAsubopt and barriers. Basin sizes are estimated from the 106 structures with the lowest energies