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Comparison of the saddle height estimates of BHGbuilder and findpath for Melitaea cinxia U6 snRNA JX878560.1 (107 nt) and the Mus musculus U1 snRNA NR_004413.2 (166 nt). Here, the x-axes denote the indices of LM-pairs, which are sorted according to their saddle heights in an increasing order and the y-axes are the corresponding saddle heights (kcal/mol) estimations derived from different methods. The inset shows the difference in saddle heights between BHGbuilder and findpath
