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. 2014 Apr 22;2:8. doi: 10.3389/fbioe.2014.00008

Table 1.

Interaction potentials of the referenced model and corresponding parameters.

Interaction type Potential Parameters
Tail–tail Vsc ϵ = 1, σLJ = 1, rc = 2σLJ
Head–tail ϵ = 1, σLJ = 1.05, rc = 1σLJ
Solvent–tail ϵ = 1, σLJ = 1.1, rc = 1σLJ
Head–head
Solvent–head
Solvent–solvent None
Bond length V FENE νFENE = 100, r0 = 0.7, Δrm = 0.2
Bond angle V ba νba = 4.7

r is the distance of the connecting vector of two particles and θ is the angle between every three adjacent beads. The SI values are calculated using σLJ ~ 6Å and ϵ ~ 3.6.10−21J (Neder et al., 2010).