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. 2014 Apr 22;3:93. [Version 1] doi: 10.12688/f1000research.3720.1

Table 2. Quantitative model input data.

Quantity Value Source
Δ[Ca 2+] shoulder 300 nM [ 17] and this article
[Ca 2+] lys 400–600 μM [ 44]
lysosomal average radius 180 nm this article, Figure 3
(cylindrical) SMC radius 6 μm [ 46]
SMC length 130 μm [ 46]
SMC cytosolic volume 2.4×10 −12 L see Supplementary material
TPC2 complexes per lysosome 20 [ 48, 45] and this article
TPC2 complex Ca 2+ release rate variable this article, Figure 5
SERCA2a surface density 6250/ μm2 [ 39]
SERCA2a first Ca 2+ binding (unbinding) rate 5×10 8M −1s −1 (60 s −1) [ 5052]
SERCA2a second Ca 2+ binding (unbinding) rate 4×10 8M −1s −1 (60 s −1) [ 5052]
free Ca 2+ diffusivity, D free 2.23×10 −10 m 2/s [ 53, 54]
Ca 2+ buffer diffusivity, D buffer 8.4×10 −11 m 2/s [ 55]

Summary of input parameters used in various phases of the quantitative model, and references to the origin of their values.