Table 2. Quantitative model input data.
Quantity | Value | Source |
---|---|---|
Δ[Ca 2+] shoulder | 300 nM | [ 17] and this article |
[Ca 2+] lys | 400–600 μM | [ 44] |
lysosomal average radius | 180 nm | this article, Figure 3 |
(cylindrical) SMC radius | 6 μm | [ 46] |
SMC length | 130 μm | [ 46] |
SMC cytosolic volume | 2.4×10 −12 L | see Supplementary material |
TPC2 complexes per lysosome | 20 | [ 48, 45] and this article |
TPC2 complex Ca 2+ release rate | variable | this article, Figure 5 |
SERCA2a surface density | 6250/ μm2 | [ 39] |
SERCA2a first Ca 2+ binding (unbinding) rate | 5×10 8M −1s −1 (60 s −1) | [ 50– 52] |
SERCA2a second Ca 2+ binding (unbinding) rate | 4×10 8M −1s −1 (60 s −1) | [ 50– 52] |
free Ca 2+ diffusivity, D free | 2.23×10 −10 m 2/s | [ 53, 54] |
Ca 2+ buffer diffusivity, D buffer | 8.4×10 −11 m 2/s | [ 55] |
Summary of input parameters used in various phases of the quantitative model, and references to the origin of their values.