Table 1. Criteria for the search strategy used in drug target rankings.
Criteria (default weighting) | Weighting |
FPKM1 > 10 in each tissue | 0.1 |
Essentiality2 | 0.1 |
Drug literature: hit to ChEMBL | 0.25 |
Drug literature: druggable in ChEBML | 0.75 |
Drug literature: tractable in ChEBML | 0.25 |
DrugBank: hit to DrugBank approved list | 1 |
No DrugBank approved target, although clinical data are available | 0.25 |
TTD: protein is orthologous to TTD-successful target | 1 |
TTD: No TTD-successful target but matches compound target | 0.25 |
Lead compound found | 1 |
The protein is a GPCR or a protein kinase | 1 |
No lead compound but presence of drug domain | 0.2 |
FPKM represents Fragments Per Kilobase of transcript per Million mapped reads.
Essentiality, lethal phenotype in mouse ortholog knockout or lethal were considered indicative of essential genes in tree shrew.