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. Author manuscript; available in PMC: 2015 Jul 1.
Published in final edited form as: Expert Opin Ther Targets. 2014 Apr 21;18(7):725–730. doi: 10.1517/14728222.2014.909414

Table 2.

Statistically significant trends in mutation patterns§ involving novel SMGs identified in non-ultramutated ECs in the TCGA study [7]

Molecular Subgroup Gene Pair Trend in Mutation Pattern § p-value§
Hypermutated/MSI ARID5B-ZFHX3 Co-occurrence 0.035
CTCF-FGFR2 Co-occurrence 0.025
FBXW7-LIMCH1 Co-occurrence 0.021
BCOR- PPP2R1A Co-occurrence 0.006
HIST1H2BD -RPL22 Co-occurrence 0.005
SPOP-RPL22 Co-occurrence 0.016
SPOP-CCND1 Co-occurrence 0.005
SPOP-PPP2R1A Co-occurrence 0.040
MECOM-PPP2R1A Co-occurrence 0.021
MECOM-ATR Co-occurrence 0.0004
METTL14-FGFR2 Co-occurrence 0.048
METTL14-PPP2R1A Co-occurrence 0.021
SGK1-RBMX Co-occurrence 0.013
TNFAIP6-MECOM Co-occurrence 0.046
TNFAIP6-METTL14 Co-occurrence 0.046
Copy number low/MSS SPOP-PTEN Mutual exclusivity 0.029
SOX17-CTNNB1 Mutual exclusivity 0.043
FBXW7-CTNNB1 Mutual exclusivity 0.022
FBXW7-SOX17 Co-occurrence 0.047
MECOM-PIK3R1 Co-occurrence 0.011
Copy number high/serous-like CHD4-FBXW7 Co-occurrence 0.009
GIGYF2-TP53 Mutual exclusivity 0.001
Ultramutated ZFHX3-PIK3CA Co-occurrence 0.015
ZFHX3-ATR Co-occurrence 0.029
GIGYF2-CSDE1 Co-occurrence 0.004
SGK1-CTNNB1 Co-occurrence 0.017
ATR-CTNNB1 Co-occurrence 0.017
CSDE1-FGFR2 Co-occurrence 0.041
GIGYF2-FGFR2 Co-occurrence 0.041
LIMCH1-PPP2R1A Co-occurrence 0.020
SPOP-KRAS Mutual exclusivity 0.009
RBMX-KRAS Mutual exclusivity 0.029
CCND1-RPL22 Co-occurrence 0.014
§

Data were obtained from the cBioCancer Genomics Portal [32,33]; SMGs identified in the ultramutated subgroup were not included in the input query. Only gene-pairs demonstrating a p-value <0.05, as derived via Fisher's Exact test are shown; p-values are not adjusted for FDR.