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. 2014 Aug 11;9(8):e104840. doi: 10.1371/journal.pone.0104840

Table 1. Comparison of various energy values and docking features for each of the best of modelled complex of Pi54 orthologues and AVR-Pi54 using ZDOCKER in DS3.5.

Name Forcefield Potential Energy(kcal/mol) Van der WaalsEnergy (kcal/mol) Electrostatic Energy(kcal/mol) TotalEnergy Binding energy withAVR-PI54 (kcal/mol)
Pi54 CHARMm −22362.03 −2303.26 −23069.97 −47735.26 2265.89
Pi54rh CHARMm −22904.48 −2426.16 −23654.45 −48985.13 −1883.53
Pi54of CHARMm 23888.54 2579.13 24675.68 51143.35 −1942.56
AVR-Pi54 CHARMm −7388.96 −778.53 −7751.92 −15919.42

Binding energy = energy of complex − [energy (receptor) + energy (ligand)].