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. 2014 Jul 30;8(1):14. doi: 10.1186/1479-7364-8-14

Figure 3.

Figure 3

Comparison of SNVs calls from GATK versus SAMtools using data from 30 subjects. For these comparisons, we used the UnifiedGenotyper algorithm in GATK and mpileup in SAMtools. Sanger sequencing was performed to evaluate the accuracy of these calls.