Table III.
SNPs associated with haemolytic score.
| Variant information |
Meta- analysis |
CSSCD |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Chr | Gene | bp | Coded allele |
Non- coded allele |
MAF | β | SE | P-value | β | SE | P-value |
| rs7203560 | 16 | NPRL3 | 184390 | C | A | 0·07 | −0·44 | 0·07 | 2·06 × 10−09 | −0·44 | 0·09 | 6·04 × 10−07 |
| rs7948471 | 11 | OR51I2,OR51I1 | 5471746 | A | G | 0·21 | −0·26 | 0·04 | 3·03 × 10−10 | −0·21 | 0·05 | 5·87 × 10−05 |
| rs7938426 | 11 | OR51I2,OR51I1 | 5471832 | G | A | 0·21 | −0·25 | 0·04 | 1·09 × 10−08 | −0·21 | 0·05 | 6·08 × 10−05 |
| rs2445284 | 11 | OR51L1 | 5029703 | G | A | 0·05 | −0·82 | 0·07 | 1·34 × 10−29 | −0·42 | 0·10 | 7·39 × 10−05 |
| Variant information |
Walk-PHaSST |
PUSH |
London |
||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP | Chr | Gene | bp | Coded allele |
Non- coded allele |
MAF | β | SE | P-value | β | SE | P-value | β | SE | P-value |
| rs7203560 | 16 | NPRL3 | 184390 | C | A | 0·07 | −0·53 | 0·22 | 0·014 | −0·13 | 0·31 | 0·672 | −0·42 | 0·20 | 0·0367 |
| rs7948471 | 11 | OR51I2, OR51I1 | 5471746 | A | G | 0·21 | −0·35 | 0·11 | 0·002 | −0·39 | 0·14 | 0·004 | −0·46 | 0·15 | 0·017 |
| rs7938426 | 11 | OR51I2, OR51I1 | 5471832 | G | A | 0·21 | −0·37 | 0·11 | 0·0012 | −0·39 | 0·14 | 0·004 | NA | NA | NA |
| rs2445284 | 11 | OR51L1 | 5029703 | G | A | 0·05 | −1·32 | 0·15 | 1·60 × 10−17 | −1·75 | 0·17 | 3·01 × 10−21 | 0·41 | 0·28 | 0·146 |
Single nucleotide polymorphisms (SNPs) meeting significance threshold (5 × 1004) in the CSSCD study that replicate in the three independent cohorts. The table reports the SNP identifier from dbSNP, chromosome (Chr), physical coordinates [human genome (hg)19], the coded allele in PLINK (also minor allele) and the non-coded allele, the minor allele frequency (MAF), the gene clusters where the SNP is located, and regression coefficient (β), standard error (SE) and P-value in each study. Additive models of association were used in all studies adjusting for age and gender, bp denotes position of the SNP according to hgl9 coordinates.