Table 2.

Comparison between the use of the alphabet A and the compressed alphabet SE-V (10).

Seq1: sAaNiLvGEnlvcKvaDFGLARl
Seq2: aArNiLvGEnyicKvaDFGLARl
Seq3: $\underset{\hspace{0.17em}}{\text{a}}\underset{\ast }{\text{A}}\underset{\hspace{0.17em}}{\text{r}}\underset{\ast }{\text{N}}\underset{\hspace{0.17em}}{\text{v}}\underset{\ast }{\text{L}}\underset{\hspace{0.17em}}{\text{i}}\underset{\ast }{\text{G}}\underset{\ast }{\text{E}}\underset{\hspace{0.17em}}{\text{d}}\underset{\hspace{0.17em}}{\text{n}}\underset{\hspace{0.17em}}{\text{v}}\underset{\hspace{0.17em}}{\text{a}}\underset{\ast }{\text{K}}\underset{\hspace{0.17em}}{\text{i}}\underset{\hspace{0.17em}}{\text{c}}\underset{\ast }{\text{D}}\underset{\ast }{\text{F}}\underset{\ast }{\text{G}}\underset{\ast }{\text{L}}\underset{\ast }{\text{A}}\underset{\ast }{\text{R}}\underset{\hspace{0.17em}}{\text{v}}$
Using the default amino acids alphabet
Seq1: AAaNILIGENlIcKIaDFGLARI
Seq2: AArNILIGENyIcKIaDFGLARI
Seq3: $\underset{\ast }{\text{A}}\underset{\ast }{\text{A}}\underset{\hspace{0.17em}}{\text{r}}\underset{\ast }{\text{N}}\underset{\ast }{\text{I}}\underset{\ast }{\text{L}}\underset{\ast }{\text{I}}\underset{\ast }{\text{G}}\underset{\ast }{\text{E}}\underset{\ast }{\text{N}}\underset{\hspace{0.17em}}{\text{n}}\underset{\ast }{\text{I}}\underset{\hspace{0.17em}}{\text{a}}\underset{\ast }{\text{K}}\underset{\ast }{\text{I}}\underset{\hspace{0.17em}}{\text{c}}\underset{\ast }{\text{D}}\underset{\ast }{\text{F}}\underset{\ast }{\text{G}}\underset{\ast }{\text{L}}\underset{\ast }{\text{A}}\underset{\ast }{\text{R}}\underset{\ast }{\text{I}}$
Using the compressed alphabet SE-V (10)
(each class member is represented by the first letter in alphabetical order)