Table 1.
Genetic diversity of Tlr4 and mt-Cytb in two house mouse subspecies
| N/N1 | A/A1 | π ± SD1 | k1 | S1 | Hd ± SD1 | |
|---|---|---|---|---|---|---|
| Tlr4-exon 3 2244 bp | ||||||
| Mmd | 15/14 | 7/6 | 0.0009 ± 0.00007 | 1.929 | 10 | 0.736 ± 0.052 |
| Mmm | 18/16 | 15/13 | 0.0025 ± 0.00016 | 5.595 | 18 | 0.882 ± 0.028 |
| Tlr4-ECD 1644 bp | ||||||
| Mmd | 9/8 | 5/4 | 0.0005 ± 0.00007 | 0.845 | 6 | 0.554 ± 0.066 |
| Mmm | 12 | 7/7 | 0.0020 ± 0.00015 | 3.267 | 12 | 0.800 ± 0.043 |
| Tlr4-LBR 666 bp | ||||||
| Mmd | 2/1 | 2/1 | 0.0000 | 0.000 | 0 | 0.000 |
| Mmm | 7/7 | 4/4 | 0.0022 ± 0.00022 | 1.473 | 6 | 0.627 ± 0.063 |
| Tlr4-ICD 531 bp | ||||||
| Mmd | 5/5 | 2/2 | 0.0020 ± 0.00014 | 1.085 | 4 | 0.568 ± 0.039 |
| Mmm | 8/7 | 8/7 | 0.0026 ± 0.00016 | 1.398 | 4 | 0.784 ± 0.028 |
| Tlr4-TIR 435 bp | ||||||
| Mmd | 4/4 | 2/2 | 0.0024 ± 0.00015 | 1.052 | 3 | 0.551 ± 0.038 |
| Mmm | 3/2 | 3/2 | 0.0001 ± 0.00010 | 0.047 | 1 | 0.047 ± 0.044 |
| Cyt b 1123 bp | ||||||
| Mmd | 37/36 | 15/15 | 0.0046 ± 0.00022 | 5.105 | 49 | 0.983 ± 0.009 |
| Mmm | 23/20 | 9/9 | 0.0047 ± 0.00046 | 5.254 | 36 | 0.974 ± 0.016 |
Mmd, Mus musculus domesticus; Mmm, Mus musculus musculus; 62 and 39 specimens were analyzed for Mmd and Mmm, respectively; N, number of nucleotide haplotypes; A, number of amino acid variants; π, nucleotide diversity; k, average number of nucleotide differences; S, number of polymorphic sites; Hd, haplotype diversity; SD, standard deviation.
1
Indicate analysis without wild-derived strains and classical laboratory strains.