Table 2. Calculated total interaction energy and its two components – total Van der Waal’s Energy and total Electrostatic Energy.
Antibody-Carbohydrate Complex | Total Interaction Energy (in Kcal/mol) | Total Van der Waals Energy (in Kcal/mol) | Total Electrostatic Energy (in Kcal/mol) | KD (in M) | Total No of mutations in framework region with respect to the germline structure | CDR2-H electrostatic contribution (in Kcal/mol) |
mu3S193-LeY | −226.87 | −15.18 | −211.69 | 5.3×10−9 | 9 | −80.55 |
hu3S193-LeY | −220.15 | −15.61 | −204.54 | 2.4 ×10−7 | 51 | −67.15 |
BR96-LeY | −213.13 | −11.56 | −201.56 | 9.9 ×10−6 | 13 | −87.39 |
Germline antibody | −212.84 | −15.25 | −197.59 | N/A | 0 | −83.21 |
B3-LeY | −211.64 | −13.37 | −198.27 | N/A | 11 | −95.30 |
BR55-LeY | −188.16 | −10.54 | −177.62 | 8×10−6 | 6 | −110.21 |
The KD values are taken from literature for comparison purpose.