Table 3. Polymorphisms included in the Luciferase reporter design defined in Figure 3.
Position | ||||
Sequence polymorphism | Genome assembly (bp)1 | Position relative to TSS | Phenotype correlation2 | Designation2 |
Simple repeat (12/14 bases) | 21,835,941–21,835,953 | −3450 bp | No | 25 |
SINE insertion | 21,836,232–21,836,429 | −3150 bp | Yes | 24 |
Candidate SNP | 21,838,204 | −1200 bp | Yes | 21 |
Simple repeat (9 bases) | 21,838,718–21,838,745 | −700 bp | No | 20 |
SNP | 21,838,840 | −600 bp | No | 19 |
Length polymorphism | 21,839,331–21,839,366 | −100 bp | Yes | 18 |
Indel (2 bases) | 21,839,397 | −60 bp | No | 17 |