Table 2.
Distribution of Anopheles gambiae midgut lncRNA by Cufflinks class code
| Transcript class codes | Amount | LncRNA | Percentage |
|---|---|---|---|
| GENIC | |||
| Complete match | 5483 | 321 | 5.8 |
| Novel isoform | 4940 | 601 | 1.2 |
| Within reference intron | 2550 | 1616 | 63.3 |
| Read mapping errors | 15 | 10 | 66.7 |
| Overlap | 517 | 151 | 29.2 |
| Pre-mRNA | 470 | 219 | 46.6 |
| Exonic overlap to opposite strand | 131 | 90 | 68.7 |
| Subtotal | 14106 | 3008 | 21.3 |
| INTERGENIC | |||
| Polymerase run-on | 1821 | 1511 | 83.0 |
| Unknown intergenic | 5450 | 4335 | 79.5 |
| Repeat | 707 | 377 | 53.3 |
| Multiple classifications | 805 | 632 | 78.5 |
| Subtotal | 8783 | 6855 | 78.05 |
| TOTAL | 22889 | 9863 | 43.1 |
Number of An. gambiae midgut long non-coding RNA (lncRNA) by Cufflinks class codes and as a percentage of the class code transcript total.