Table 3. Heterozygosity and effective population size (N_e) estimates based on whole genome sequence data.

Sample	Heterozygosity for Polymorphic Sites	Heterozygosity for All Sites	Ne based on θWa	Ne based on θHeta
ASW	0.150	0.000952	30,859	21,649
CEU	0.190	0.000717	17,084	16,312
CHB	0.190	0.000672	15,577	15,280
CHS	0.190	0.000671	15,462	15,254
CLM	0.167	0.000769	22,443	17,486
FIN	0.195	0.000719	16,404	16,364
GBR	0.188	0.000721	17,179	16,394
IBS	0.264	0.000706	19,125	16,052
JPT	0.198	0.000673	15,289	15,311
LWK	0.142	0.000966	30,090	21,982
MXL	0.172	0.000736	20,451	16,750
PUR	0.167	0.000784	23,278	17,830
TSI	0.179	0.000723	17,795	16,446
YRI	0.154	0.000954	27,834	21,708

^aθ_W refers to Watterson's estimator of the population-scaled mutation rate θ, which is frequency-independent. θ_Het refers to the estimator based on heterozygosity, which is frequency-dependent.