Table 1. Classification of small RNAs in the mulberry leaves, bark, and male flowers.
Category | Leaves | Bark | Male flowers | |||
unique reads | total reads | unique reads | total reads | unique reads | total reads | |
Raw data | 11,752,747 | 11,491,921 | 10,513,612 | |||
high quality | 11,697,570 | 11,439,285 | 10,465,855 | |||
clean_reads [size > = 18 nt] | 3,383,828 | 10,992,174 | 3,848,791 | 11,273,911 | 2,851,747 | 10,134,148 |
match genome build2 | 2,619,858 | 9,394,886 | 2,776,320 | 9,122,054 | 2,207,022 | 8,601,051 |
exon_antisense | 75,103 | 195,404 | 77,783 | 178,514 | 74,619 | 160,433 |
exon_sense | 175,011 | 401,988 | 151,119 | 308,470 | 150,431 | 306,205 |
intron_antisense | 140,785 | 298,027 | 153,833 | 314,352 | 108,403 | 196,686 |
intron_sense | 222,666 | 865,955 | 236,136 | 714,362 | 179,397 | 511,639 |
miRNAs | 26,956 | 832,571 | 31,463 | 1,130,016 | 25,805 | 2,359,403 |
rRNA | 114,561 | 2,157,926 | 162,589 | 1,886,493 | 111,055 | 1,885,168 |
repeat | 250,148 | 525,805 | 223,690 | 414,606 | 263,197 | 435,246 |
snRNA | 2,882 | 13,281 | 4,210 | 17,357 | 3,754 | 18,088 |
snoRNA | 1,058 | 3,169 | 1,148 | 2,900 | 831 | 1,816 |
tRNA | 12,054 | 368,395 | 20,001 | 378,792 | 13,571 | 335,167 |
unannotated small RNA | 2,362,604 | 5,329,653 | 2,786,819 | 5,928,049 | 1,920,684 | 3,924,297 |