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. 2014 Jul 21;53(31):5150–5161. doi: 10.1021/bi5007404

Table 4. X-ray Diffraction Data Collection and Refinementa.

  D779W D779Y D778Y
space group C2 C2 C2
unit cell parameters a = 166.9 Å a = 167.1 Å a = 166.1 Å
  b = 195.3 Å b = 196.0 Å b = 195.1 Å
  c = 108.8 Å c = 108.7 Å c = 108.4 Å
  β = 121.6° β = 121.4° β = 121.5°
wavelength (Å) 1.000 1.000 1.000
diffraction resolution (Å) 32.0–2.20 (2.32–2.20) 32.0–2.30 (2.42–2.30) 46.9–2.30 (2.42–2.30)
no. of observations 549668 490658 485882
no. of unique reflections 149604 130815 130019
Rmerge(I) 0.106 (0.464) 0.103 (0.515) 0.095 (0.524)
Rmeas(I) 0.124 (0.556) 0.120 (0.602) 0.112 (0.612)
Rpim(I) 0.063 (0.302) 0.061 (0.310) 0.058 (0.314)
mean I 6.8 (2.1) 8.1 (2.2) 10.0 (2.5)
completeness (%) 99.9 (99.3) 99.3 (98.8) 99.9 (100)
multiplicity 3.7 (3.3) 3.8 (3.6) 3.7 (3.8)
no. of protein chains 2 2 2
no. of protein residues 1943 1943 1941
no. of protein atoms 14390 14386 14490
no. of FAD atoms 106 106 106
no. of water molecules 531 296 419
no. of sulfate ions 6 6 8
no. of glycerol molecules 4 3 4
Rcryst 0.208 0.216 0.195
Rfreeb 0.241 0.251 0.235
root-mean-square deviation for bond lengths (Å) 0.008 0.008 0.009
root-mean-square deviation for bond angles (deg) 1.102 1.107 1.106
Ramachandran plotc      
favored (%) 98.8 98.1 98.1
outliers (no. of residues) 2 2 0
average B factors (Å2)      
protein 31.5 38.9 34.5
FAD 20.0 29.3 25.2
water 28.5 31.8 30.4
sulfate 61.4 67.6 74.3
glycerol 36.5 47.3 45.3
coordinate error (Å)d 0.27 0.31 0.28
PDB entry 4Q71 4Q72 4Q73
a

Values for the outer resolution shell of data are given in parentheses.

b

A 5% random test set. A common set was used for refinement of all structures.

c

The Ramachandran plot was generated with RAMPAGE.46

d

Maximum likelihood-based coordinate error estimate reported by PHENIX.