Table 3.
SC proteins similar to proteins from the proteomes of algae, mosses, fungi, and green plants.
| Eukaryotic taxa | Total proteins in the NCBI databasea | Proteins of the SC central space | Lateral element proteins and other SC proteins | ||
|---|---|---|---|---|---|
| 1 | 2 | 3 | 4 | ||
| From animals# | From plants and fungi# | From plants and fungi# | From animals# | ||
| Chlorophyta (green algae and Viridiplantae) | 156803 | SYCP1 Mm (50) | Low similarity |
ASY2 At (117), ASY1 At (163), Hop1 Sc (99) |
HIM-3 Ce (54), FKBP6 Mm (87) |
|
| |||||
| Phaeophyceae (brown algae and Stramenopiles) | 27435 | SYCP1 Mm (53) | Low similarity | ASY2 At (65), ASY1 At (124), Hop1 Sc (71), Hop1 annotated for Ectocarpus siliculosus |
FKBP6 Mm (85) |
|
| |||||
| Bryophyta, Anthocerotophyta, and Marchantiophyta (mosses and Viridiplantae) | 95921 | Low similarity | Low similarity |
ASY2 At (183), ASY1 At (278), Hop1 Sc (86) |
FKBP6 Mm (104) |
|
| |||||
| Lycopodiophyta (Viridiplantae and Trachaeophyta) | 71720 | Low similarity | ZYP1a At (111), ZYP1b At (112) | ASY2 At (197), ASY1 At (291),Hop1 Sc (96) | SYCP2 Mm (60), FKBP6 Mm (106) |
|
| |||||
| Euphyllophyta (Viridiplantae and Trachaeophyta) | 2066225 | Low similarity | ZYP1 annotated for various s p e c i e s b |
ASY1 annotated for
Brassica oleracea;b
Hop1 Sc (100) |
FKBP6 Mm (115) |
|
| |||||
| Microsporidia (unicellular lower fungi and Opisthokonta) | 20596 | Low similarity | Low similarity | ASY1 At (53), Hop1 Sp (50), Hop1 Sc (55) | |
|
| |||||
| Blastocladiomycota, Chytridiomycota, Glomeromycota, and Fungi insertae sedis (Zygomycota) (lower fungi and (Opisthokonta) | 12709 | Low similarity | Low similarity | ASY2 At (87), ASY1 At (126),
Hop1 Sc (106) |
FKBP6 Mm (102) |
|
| |||||
| Ascomycota (Opisthokonta)—higher fungi | 1819825 | SYCP1 Mm (50), SYCP1 Dr (51) | Low similarityb | ASY2 At (75), ASY1 At (100), Hop1-like annotatedb |
HIM-3 Ce (50), FKBP6 Mm (77) |
|
| |||||
| Basidiomycota (Opisthokonta) and higher fungi | 461746 | Low similarity | Low similarity | ASY2 At (85), ASY1 At (123),Hop1 Sp (74), Hop1 Sc (141) | HIM-3 Ce (56), FKBP6 Mm (72) |
aAs of the time of study start (September 2011).
bSimilarity with cognate proteins is not shown.
Maximal scores are indicated in parentheses. Proteins with high scores (100 and higher) are in bold. The model organisms are designated as in Table 1.
#Hereinafter: SC proteins from animals are those of Dm, Ce, Dr, Mm, and from fungi and plants those of Sc, Sp, and At.