Table 1.
|
Dorsal root ganglion |
Trigeminal ganglion |
||||
---|---|---|---|---|---|---|
Gene symbol and gene name | Mouse TRPV1 lineage RPKM | Mouse non-TRPV1 lineage RPKM | Rat whole ganglion RPKM | Mouse whole ganglion RPKM | Rat whole ganglion RPKM | Human whole ganglion RPKM |
Grp, gastrin-releasing peptide |
- |
- |
- |
- |
- |
0.1 |
Grpr, gastrin releasing peptide receptor |
0.2 |
0.2 |
- |
0.3 ± 0 |
0.1 ± 0 |
0.1 |
Nmb, neuromedin B |
170.3 |
73.7 |
32.6 ± 4.49 |
16.5 ± 0.9 |
13.0 ± 0.3 |
7.5 |
Nmbr, neuromedin B receptor |
0.1 |
0.1 |
0.2 ± 0.02 |
0.1 ± 0 |
0.3 ± 0 |
0.2 |
Nppa, natriuretic peptide A; ANF |
1.5 |
1.2 |
5.1 ± 0.73 |
1.0 ± 0.1 |
0.8 ± 0.1 |
1.8 |
Nppb, natriuretic peptide B; BNP |
24.1 |
0.2 |
0.7 ± 0.14 |
2.0 ± 0.1 |
- |
0.8 |
Nppc, natriuretic peptide C; CNP |
- |
0.1 |
- |
0.1 ± 0 |
0.1 ± 0 |
0.4 |
Npr1, natriuretic peptide receptor 1; Npra |
0.7 |
1.2 |
0.8 ± 0.06 |
1.2 ± 0 |
0.9 ± 0 |
0.9 |
Npr2, natriuretic peptide receptor 2; Nprb |
38.1 |
30 |
31.7 ± 0.85 |
35.4 ± 0.4 |
36.7 ± 0.8 |
15.3 |
Npr3, natriuretic peptide receptor 3; Nprc |
0.1 |
0.8 |
4.1 ± 0.44 |
2.6 ± 0.1 |
4.3 ± 0.5 |
0.3 |
Tac1, protachykinin-1 | 597.7 | 14.1 | 140.3 ± 10.92 | 59.8 ± 2.84 | 122.2 ± 4.9 | 44.1 |
The values in the table are average expression levels (and where applicable ± SEM) in RPKM of itch related neuropeptides and their receptors. RPKM is an acronym for Reads Per Kilobase of exon model per Million mapped reads, a normalization which takes into consideration the length of coding exons of genes and depth of sequencing [9]. The mouse DRG dataset consists of TRPV1 lineage and non-TRPV1 lineage RNA samples which were obtained from BAC-TRPV1 promoter-Cre mice as described (Mishra et al., 2011) [6]. Annotation builds mm10, rn4, and hg19 were used, respectively, for the mouse, rat and human genome mapping. Dashes (-) represent values of 20 reads or below; this number of reads is too inaccurate for further consideration.