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. 2014 Jul 23;42(14):8884–8894. doi: 10.1093/nar/gku642

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© The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — VNTR. Watson read-TR (bottom) mapped to a ref-TR (top) from Chr 15:23,215,373. The number of copies, pattern motifs and motif order differ between the two, conditions which favor profile-based alignment. Blue—consensus pattern of ref-TR; red—multiple alignment of individual copies within a repeat, red matches the consensus, differences are shown explicitly; order of copies vertically matches order in the tandem array; light blue—consensus pattern of read-TR, here with no differences from the ref-TR consensus; green—flanking sequence with differences; not all available flanking sequence is shown due to page width limitation. Vertical gap due to insertion in another repeat (not shown).