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. 2014 Jul 25;15(1):628. doi: 10.1186/1471-2164-15-628

Table 4.

Annotation of PmNV putative ORFs

ORF Strand Position Length Best BLAST match Signature
Start End nt aa ORF, protein encoded, or mass Species aa identity (% match identity) E value
1 + 1 1359 1356 452 polyhedrin
2 - 1525 1989 462 154 coiled-coil
3 - 2033 4861 2826 942 von Willebrand factor type A Frankia sp. CN3 33 8 × 10-3 vWFA, ZF_RING_2
4 - 4954 5913 957 319
5 + 5998 9273 3273 1091 DNA polymerase Helicoverpa zea nudivirus 2 26 2 × 10-102 POLBc
6 + 9354 10559 1203 401 methyltransferase Ceratitis capitata 33 FtsJ
7 - 10563 10772 207 69 TM
8 - 10779 11455 684 228 Ac92-like (sulfhydryl oxidase) Heliothis zea virus 1 42 1 × 10-17 Evr1_Alr, TM
9 - 11455 13482 2025 675 vp91 (capsid) Oryctes rhinoceros virus 31 7 × 10-32 ChtBD2, TM
10 + 13622 14971 1347 449 Odv-e56/pif-5 (envelope) Heliothis zea virus 1 27 2 × 10-30 TM
11 - 13780 14331 549 183 TM
12 + 15057 15536 477 159
13 - 15325 15549 222 74 TM
14 + 15548 16807 1257 419 p47 Heliothis zea virus 1 24 1 × 10-5
15 - 16816 18108 1290 430 per-os infectivity factor 2 (pif-2) Macrobrachium nudivirus 66 2 × 10-75 Baculo_44, coiled-coil, TM
16 + 17191 17598 405 135 OHCU decarboxylase Sarcophilus harrisii 27 3 × 10-3 TM
17 - 18139 18987 846 282 HZV_115-like Oryctes rhinoceros virus 33 0.58 p-loop_NTPase, NK superfamily
18 - 19071 20372 1299 433
19 + 20465 20869 402 134
20 + 20812 22083 1269 423 flap endonuclease 1 (FEN-1) Heliothis zea virus 1 29 3 × 10-14
21 + 22080 22556 474 158
22 - 22553 23485 930 310 31 K structural protein Chelonus inanitus 24 1 × 10-9
23 + 23615 26713 3096 1032 RNA polymerase (lef-8) Heliothis zea virus 1 28 8 × 10-53 RNA_pol_Rpb2_6
24 + 26864 28057 1191 397 p51 late protein Heliothis zea virus 1 23 4 × 10-9 SBP_BACTERIAL_1
25 - 28160 31906 3744 1248 AF-4, ZnF_C2H2
26 + 31688 31912 222 74 TM
27 - 31969 32715 744 248
28 - 34005 34214 210 69
29 - 34463 42040 7572 2524 TM
30 - 42077 42649 570 190
31 + 43013 43204 189 63
32 - 43300 43512 210 70
33 + 43884 44783 897 299 tripartite motif-containing protein 10-like Alligator mississippiensis 37 7 × 10-9 RING, coiled-coil
34 - 44939 46594 1653 551 odv-e66 (chondroitin lyase) Oryctes rhinoceros virus 29 1 × 10-23 odv-e66
35 + 47292 48599 1305 435
36 - 48994 50901 1905 635 odv-e66 (chondroitin lyase) Oryctes rhinoceros virus 26 5 × 10-22 odv-e66, TM
37 - 51077 51280 201 67
38 + 51353 52297 942 314 Guanosine monophosphate kinase Heliothis zea virus 1 31 5 × 10-17
39 + 52359 53936 1575 525 per-os infectivity factor 1 (pif-1) Heliothis zea virus 1 35 5 × 10-57 PIF, TM
40 - 53953 54573 618 206
41 + 54167 54595 426 142 TM
42 - 54573 56423 1848 616 orf21 Helicoverpa zea nudivirus 2 25 1 × 10-7
43 + 56796 57572 774 258
44 + 57636 58376 738 246
45 + 58384 59130 744 248 histidine decarboxylase (PmV-like) Paramecium bursaria Chlorella virus NY-2B 27 0.15
46 + 59185 60201 1014 338 thymidylate kinase Heliothis zea virus 1 27 2 × 10-14 p-loop_NTPase
47 + 60297 61211 912 304
48 + 61235 63007 1770 590 DNA ligase-like Helicoverpa zea nudivirus 2 24 2 × 10-6
49 + 63022 63729 705 235 SJCHGC06586 protein Schistosoma japonicum 38 1 × 10-7 RING, coiled-coil
50 - 63726 64037 309 103
51 + 64012 64221 207 69 TM
52 + 64249 64776 525 175 late expression factor 5 (lef-5) Spodoptera frugiperda MNPV 31 0.028 Baculo_LEF-5_C
53 + 65083 65247 162 54 orf9 Helicoverpa zea nudivirus 2 37 0.003 TM
54 + 65268 65930 660 220
55 + 65979 66899 918 306 integrase Helicoverpa zea nudivirus 2 33 1 × 10-32 INT_REC_C
56 + 66883 67752 867 289 very late expression factor 1 Heliothis zea virus 1 32 5 × 10-11 DNA_REC_C
57 - 67753 67959 204 68 coiled-coil
58 - 67965 69689 1722 574 lef-9 Heliothis zea virus1 32 3 × 10-63
59 + 69705 70553 846 282 38 K protein Chelonus inanitus 37 2 × 10-17
60 - 70543 70824 279 93
61 + 70823 71515 690 230 orf49 Helicoverpa zea nudivirus 2 29 2.9
62 + 71512 71862 348 116 TM
63 - 71859 72215 354 118
64 - 72286 72633 345 115 TM
65 - 72717 74030 1311 437 orf51 Heliothis zea virus1 30 7 × 10-30 p-loop_NTPase
66 + 74079 75329 1248 416 orf84 Helicoverpa zea nudivirus 2 23 9 × 10-4
67 - 75597 76169 573 191 Crocosphaera watsonii 25 1 × 10-4
68 - 76400 76963 561 187
69 - 76980 77966 984 328 HzNVORF106-like protein Cotesia congregata 24 1 × 10-6
70 - 77935 78555 618 206
71 - 78633 80174 1539 513
72 - 80247 82301 2052 684 p74 / pif-0 (envelope) Heliothis zea virus 1 30 4 × 10-95 Baculo_74, TM
73 + 82393 83277 882 294 Zonadhesin Sorex araneus 49 2 × 10-52 TM
74 - 82986 83258 237 90 TM
75 + 83362 83934 570 190
76 + 84006 85736 1728 576 helicase 2 Danaus plexippus 30 1 × 10-46
77 + 85788 86687 897 299
78 - 86652 87311 657 219 orf100 Heliothis zea virus 1 23 0.014
79 + 87109 89256 2145 715 helicase 2 Danaus plexippus 28 5 × 10-39 TM
80 + 89240 92104 2862 954 coiled-coil
81 - 90949 91242 291 97
82 + 92108 93043 933 311
83 + 93036 93647 609 203
84 - 93644 95206 1560 520
85 - 95208 95618 408 136
86 + 95617 96090 471 157 Ac81-like Helicoverpa zea nudivirus 2 36 3 × 10-21 TM
87 + 96083 97993 1908 636
88 + 98006 98437 429 143 Ac68-like/pif-6 Helicoverpa zea nudivirus 2 29 8 × 10-11 TM
89 - 98438 99691 1251 417
90 + 99781 100530 720 240 VLF-1 protein Helicoverpa zea nudivirus 2 28 5 × 10-5
91 - 100500 101912 1410 470 late expression factor 4 Helicoverpa zea nudivirus 2 26 4 × 10-18
92 - 101932 102255 321 107
93 - 102312 102890 576 192 per-os infectivity factor 3 Helicoverpa zea nudivirus 2 38 4 × 10-26 TM
94 - 102887 106702 3813 1271 helicase Helicoverpa zea nudivirus 2 28 3 × 10-19 primase_Cte
95 + 106149 106370 219 73
96 + 106701 107399 696 232 19kda protein/Odv-e28/pif-4 Oryctes rhinoceros virus 38 5 × 10-21 Baculo_19, TM
97 - 107374 108123 747 249
98 + 108113 108946 831 277 Esterase/lipase Helicoverpa zea nudivirus 2 27 3 × 10-4 AAA_17, TM
99 - 108943 110187 1242 414 GrBNV_gp67-like Oryctes rhinoceros virus 29 9 × 10-8 EF_HAND_1, coiled-coil
100 - 110290 110595 303 101 11 K virion structural protein Oryctes rhinoceros virus 32 4 × 10-6 TONB_DEPENDENT_REC_1, TM
101 - 110705 111106 399 133
102 + 111081 111881 798 266
103 - 111883 113868 1983 661
104 + 113631 113864 231 77
105 + 114593 114865 270 90
106 - 114757 115062 303 101 apoptosis inhibitor IAP-1 Buzura suppressaria NPV 43 2 × 10-13 BIR
107 - 115114 115821 705 235 HzNVORF9-like Chelonus inanitus 25 4 × 10-10
108 + 115917 116648 729 243 orf101 Helicoverpa zea nudivirus 2 23 0.1 ribokinase_pfkB_like, TM
109 - 116750 116896 144 48
110 - 116971 117372 399 133 TM
111 + 117179 117469 288 96
112 + 117529 118617 1086 362 TM
113 + 118674 118928 252 84 sortilin-related receptor precursor Acyrthosiphon pisum 42 9 × 10-9 LDLRA_2
114 + 118723 118911 186 62 TM
115 + 119035 119493 456 152 TM