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. 2014 Aug 14;10(8):e1003737. doi: 10.1371/journal.pcbi.1003737

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© 2014 Zhang et al

This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.

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(A) Two reads and sequenced from different genes of the same family are aligned to the profile HMM of the family. Their sequence overlap is indicated in red. (B) Read and read have an alignment overlap of 66 and a sequence overlap of 25 (in bold). (C) Sequenced from homologous genes, and show higher similarity in their translated peptide sequences than in their DNA sequences.

Inline graphic — (A) Two reads and sequenced from different genes of the same family are aligned to the profile HMM of the family. Their sequence overlap is indicated in red. (B) Read and read have an alignment overlap of 66 and a sequence overlap of 25 (in bold). (C) Sequenced from homologous genes, and show higher similarity in their translated peptide sequences than in their DNA sequences.