Table 1. Primers used for qPCR to detect the heat tolerance-related SNP all-53308-760 T/C.
Index | Sequences* | Amplification efficiency** |
all-53308 forward | ATGGATCTCAGAAGTGAACGT | 0.998 |
all-53308 reverse | ATGATTCTAGCCTGTACCATTAC | |
all-53308-T forward | GGATCTCAGAAGTGAACGTCTcAT | 1.02 |
all-53308-C forward | GGATCTCAGAAGTGAACGTCTtAC | 0.958 |
18S rRNA forward | CTGACCATAAACGATGCCGACT | 0.938 |
18S rRNA reverse | AACTTTGGTTTCCCGTAAGCTG |
*The bases bold are an allele-specific base, and the bases in lowercase are a deliberate mismatch.
**The amplification efficiency of the allele-specific forward primer was determined in combination with all-53308 reverse primer.