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. 2014 Aug 14;9(8):e104960. doi: 10.1371/journal.pone.0104960

Table 1. Primers used for qPCR to detect the heat tolerance-related SNP all-53308-760 T/C.

Index Sequences* Amplification efficiency**
all-53308 forward ATGGATCTCAGAAGTGAACGT 0.998
all-53308 reverse ATGATTCTAGCCTGTACCATTAC
all-53308-T forward GGATCTCAGAAGTGAACGTCTcAT 1.02
all-53308-C forward GGATCTCAGAAGTGAACGTCTtAC 0.958
18S rRNA forward CTGACCATAAACGATGCCGACT 0.938
18S rRNA reverse AACTTTGGTTTCCCGTAAGCTG

*The bases bold are an allele-specific base, and the bases in lowercase are a deliberate mismatch.

**The amplification efficiency of the allele-specific forward primer was determined in combination with all-53308 reverse primer.