Table 1. Assembly metrics, annotation information, and reads mapped for transcriptome assembly.
Number of contigs | 356,237 |
Total span (bp) | 156,920,694 |
Number of contigs >1Kb | 22,934 |
Max Contig Length (bp) | 16,256 |
Mean Contig Length (bp) | 440 |
N50 (bp) | 487 |
Number of contigs with BLAST hits* | 70,621 |
% of contigs with BLAST hits* | 19.8 |
% of reads mapped to transcriptome (bowtie [32]) | 58.13 |
*Contigs compared to NCBI’s non-redundant protein database using BLASTx, hits with e-value≤1e-06 retained.