Table 2. Annotated transcripts differentially expressed in both resistant (GX_early) and susceptible (F3L early and/or late) oysters in response to challenge with R. crassostreae.
| Contig | Type ofDE (GX) | Type ofDE (F3L) | Annotation | Accession # |
| comp3607_c0_seq3 | Up | Up | arylsulfatase a-like | XP_002607295 |
| comp1799_c0_seq1 | - | Down | c-type lectin | XP_002603342 |
| comp10350_c0_seq1 | Down | - | c-type lectin 2 | XP_002603342 |
| comp3136_c3_seq2 | - | Down | c1q domain containing protein 1q11 | CBX41660 |
| comp887_c0_seq1 | Up | Up | c1q domain containing protein 1q13 | CBX41662 |
| comp12483_c0_seq1 | Down | Down | c1q domain containing protein 1q13 | CBX41662 |
| comp4668_c0_seq2 | - | Down | c1q domain containing protein 1q40 | CBX41689 |
| comp1886_c0_seq5 | Up | c1q domain containing protein 1q83 | CBX41732 | |
| comp6091_c0_seq2 | Down | Down | camp responsive element binding 2 | AAU93879 |
| comp1102_c0_seq3 | Down | Down | collagen alpha-5 chain | XP_002595170 |
| comp4943_c0_seq1 | Up | Up | cytochrome family subfamily polypeptide 2-like | XP_002594971 |
| comp13170_c1_seq3 | Down | Down | deleted in malignant brain tumors 1 | XP_002833280 |
| comp7186_c1_seq4 | Up | Up | dna damage-regulated autophagy modulator protein 2 | NP_001230625 |
| comp631_c0_seq1,2 | Up | Up | dopamine beta hydroxylase-like | XP_002117561 |
| comp1893_c0_seq1 | Up | Up | dopamine beta hydroxylase-like | AAS92605 |
| comp8625_c0_seq1 | Up | Up | fatty acid synthase-like | ACZ55138 |
| comp2451_c0_seq15 | Up | Up | galactosamine (n-acetyl)-6-sulfate sulfatase-like | XP_002605064 |
| several (>10) contigs | Down | Down | gtpase imap family members | XP_001920359, AAH96680 |
| comp3498_c0_seq2 | Up | Up | heat shock protein 60 | ABN11936 |
| comp5396_c0_seq2 | Down | Down | melatonin receptor 1a | ADM73175 |
| comp3971_c0_seq4 | Down | Down | monocarboxylate transporter | XP_002573719 |
| comp3971_c0_seq1 | Down | Down | monocarboxylate transporter | XP_001606814 |
| comp3971_c0_seq2 | Down | Down | monocarboxylate transporter | EGI68511 |
| comp11520_c0_seq1 | Up | Up | nose resistant to fluoxetine family member (nrf-6)-like | XP_002600112 |
| comp50794_c0_seq1 | Down | Down | novel protein human megf11 | EGW04058 |
| comp30091_c0_seq2 | Down | Down | nudt9 | EGD73755 |
| comp9303_c0_seq5 | Up | Up | omega class glutathione s-transferase | CAD89618 |
| comp11276_c0_seq3 | Up | Up | polyketide synthase pks2 | XP_002734101 |
| comp25817_c0_seq1 | Down | Down | protein tyrosine phosphatase | ACH42087 |
| several contigs | Up | Up | scavenger receptor cysteine-rich protein | XP_001186391 |
| comp2875_c0_seq2 | Up | Up | serine protease | XP_002593726 |
| comp3584_c0_seq1 | Down | Up | serine protease inhibitor cvsi-1 | Q30HU9 |
| comp619_c0_seq1 | Up | Up | serine protease inhibitor cvsi-2 | B9A8D7 |
| comp928_c0_seq1 | Up | Up | serine protease inhibitor cvsi-2 | B9A8D7 |
| comp28180_c0_seq1 | Down | Down | sushi-repeat-containing x-linked 2 | XP_002932840 |
| comp869_c0_seq2 | Down | Down | x-box binding | XP_002732738 |
Contig number, direction of differential expression (up- or down-regulation), and name and accession number for the best BLASTx hits are shown.