Table 3. Top annotated transcripts differentially expressed in susceptible oysters at early and late timepoints after challenge with R. crassostreae.
| Contig | logFC_1d | logFC_5d | logFC_15d | logFC_30d | Annotation | Accession # |
| comp1465_c0_seq5 | −11.10 | −11.00 | - | - | adipose differentiation-related protein | XP_002595036 |
| comp1612_c0_seq1 | −10.62 | −4.16 | - | - | ankyrin unc44 | XP_001190300 |
| comp20450_c0_seq1 | - | - | −10.12 | −10.18 | ankyrin unc44 | XP_782809 |
| comp781_c0_seq4 | - | - | 4.05 | 4.99 | apextrin-like protein | AEK10749 |
| comp6246_c1_seq1 | 2.83 | 4.62 | - | - | cadherin- isoform h | BAD91058 |
| comp4943_c0_seq1 | - | - | 3.27 | 4.55 | cytochrome family subfamily polypeptide 2-like | XP_002594971 |
| comp4943_c0_seq4 | - | - | 2.27 | 4.06 | cytochrome p450 2b11 | BAD02925 |
| comp4943_c0_seq5 | - | - | 2.56 | 4.57 | cytochrome p450 2g1-like | NP_001106451 |
| comp4943_c0_seq6 | - | - | 3.54 | 4.74 | cytochrome p450 2k | XP_002594509 |
| comp1153_c0_seq7 | −5.74 | −7.45 | - | - | dermatopontin 2 | AAZ80787 |
| comp1153_c0_seq5 | −4.88 | −6.67 | - | - | dermatopontin 2 | XP_001628981 |
| comp1382_c0_seq1 | - | - | 7.21 | 8.66 | dermatopontin 2 | XP_001628981 |
| comp211_c0_seq2 | - | - | −9.54 | −4.24 | developmentally-regulated vdg3 | ABB76764 |
| comp211_c0_seq3 | - | - | - | 3.90 | developmentally-regulated vdg3 | ABB76764 |
| comp211_c0_seq5 | −12.84 | −12.73 | −8.48 | −7.23 | developmentally-regulated vdg3 | ABB76764 |
| comp7066_c0_seq1,2 | - | - | - | 4.14 | developmentally-regulated vdg3 | ABB76764 |
| comp84_c0_seq2 | 3.74 | 5.64 | - | - | developmentally-regulated vdg3 | ABB76764 |
| comp84_c0_seq3 | 2.82 | 4.73 | - | - | developmentally-regulated vdg3 | ABB76764 |
| comp14053_c0_seq4 | - | 2.26 | 2.24 | - | epididymal secretory protein e1 precursor | ACO09278 |
| comp1891_c0_seq1 | - | 3.02 | - | - | epididymal secretory protein e1 precursor | AAX61146 |
| comp1891_c0_seq2 | - | 1.98 | - | - | epididymal secretory protein e1 precursor | XP_003408814 |
| comp1234_c1_seq4 | −8.35 | −6.77 | - | - | fibrinogen c domain-containing protein 1-a-like | XP_003390678 |
| comp3625_c0_seq2 | −10.54 | −5.97 | - | - | fibrinogen c domain-containing protein 1-like | XP_003391179 |
| comp3814_c0_seq1 | - | - | −11.06 | −6.66 | fibrinogen-related protein | XP_002609404 |
| comp9922_c0_seq7 | 5.53 | 2.52 | heat shock 70 kda protein cognate 3 | BAD15288 | ||
| comp2543_c1_seq1 | - | - | −11.71 | −5.66 | hemicentin 2-like | XP_002731765 |
| comp7788_c0_seq2 | −10.40 | −5.31 | - | - | hippocalcin-like protein 1 | XP_001639635 |
| comp6419_c0_seq3 | −11.25 | - | - | - | ing (mammalian inhibitor of growth) homolog family member (ing-3)-like | XP_002165512 |
| comp8790_c1_seq1 | - | - | −11.57 | −5.16 | legumain [Haliotis discus discus] | ABO26629 |
| comp1637_c0_seq1 | −5.38 | −4.31 | −2.86 | −5.54 | low affinity immunoglobulin epsilon fc receptor | NP_001138689 |
| comp1890_c0_seq1 | −10.44 | −2.63 | - | - | oncoprotein-induced transcript 3 | XP_002595494 |
| comp40_c0_seq9 | 6.11 | 8.14 | - | - | period clock protein | ABM66066 |
| comp1593_c0_seq2 | −7.74 | −6.47 | - | - | proliferating cell nuclear antigen-like | XP_001631319 |
| comp4352_c1_seq3 | - | - | −10.54 | −10.86 | ring finger protein 145 | AAH55485 |
| comp11695_c0_seq2 | 5.11 | 4.01 | 7.25 | 6.17 | tyrosine-protein kinase fer- partial | XP_002945302 |
Magnitude of differential expression in each treatment group is expressed as log10 fold change (logFC) over expression in the control group (CGX15/30d). The name and accession number for the best BLASTx hits are shown.