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. 2014 Jul 25;15(1):252. doi: 10.1186/1471-2105-15-252

Table 1.

The mean SP and TC scores of the pairwise alignments generated by HHsearch1.2, HHsuite and HMMsato on the CASP9 test data set consisting of 1,138 pairs of proteins

Method Mean SP score Mean TC score
HHsearch (without secondary structure information) 48.69 48.34
HHsearch (with secondary structure information) 50.00 49.65
HHsuite (without secondary structure information) 48.47 48.12
HHsuite (with secondary structure information) 49.76 49.41
HMMsato 50.39 50.02

Bold numbers are the highest scores.