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Statistics of ChIP-seq and RNA-seq data processing and quality checks.
| No. reads | Reads mapped | Reads excluded | Reads analyzed | %GC | Quality score | |
|---|---|---|---|---|---|---|
| ChIP-seq | ||||||
| H3K27ac | 24770844 | 13300823 (53.7%) | 3401339 (13.7%) | 12286069 (49.6%) | 45 | 38 |
| H3K27me3 | 22053926 | 12832729 (58.2%) | 3861626 (17.5%) | 10249493 (46.5%) | 49 | 38 |
| Input | 19456294 | 9684252 (49.8%) | 3235677 (16.6%) | 9068488 (50.7%) | 42 | 38 |
| RNA-seq | ||||||
| Midgut | 83046282 | 60149597 (72.4%) | 52 | 37 | ||
| Salivary gland | 78884200 | 57346015 (72.7%) | 52 | 37 | ||
