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. Author manuscript; available in PMC: 2014 Aug 15.
Published in final edited form as: Proteins. 2012 Mar 13;80(6):1503–1521. doi: 10.1002/prot.24035

Table III.

The enrichment factors (EF) and yields of fifty-seven known β2AR antagonists by theoretical models versus two crystal structures with decoys set I (PDSP binding decoys plus WDI drug-like decoys).

Structure/Model Docking method EF at 1% db EF at 5% db EF at 25% db % db to find 25% seeds Yield 25% db EFmax % db EFmax occurred ROC AUC AUC at 25% db α=20 BEDROC α=53.6 α=100
2RH1 Glide4.01 5.83 5.30 3.08 4.74 77.19 6.80 1.81 0.88 0.11 0.72 0.75 0.74
AutoDock4.0 3.89 1.06 1.75 11.74 43.86 0.68 5.18 0.73 0.05
eHiTS6.2 1.94 1.77 1.82 13.54 45.61 3.89 0.45 0.74 0.05
3D4S Glide4.01 6.12 6.66 3.17 4.05 79.31 7.65 0.22 0.89 0.11 0.77 0.80 0.79
3P0G Glide4.01 5.74 3.33 2.69 7.21 67.24 7.66 0.68 0.81 0.08 0.50 0.52 0.62

CM1 Glide4.01 5.83 3.53 2.87 6.77 71.93 7.77 1.35 0.83 0.08 0.50 0.52 0.58
AutoDock4.0 0.00 1.77 2.17 13.77 54.39 2.59 1.35 0.76 0.04
eHiTS6.2 0.00 0.71 1.75 14.67 43.86 2.03 15.58 0.72 0.04
CM2 Glide4.01 7.66 4.52 2.90 5.63 72.41 7.66 1.35 0.86 0.09 0.61 0.72 0.83
AutoDock4.0 3.83 2.09 2.48 11.49 62.07 3.83 0.90 0.81 0.06
eHiTS6.2 0.00 1.04 2.14 12.16 53.45 2.30 18.02 0.73 0.05
CM3 Glide4.01 0.00 1.41 1.54 17.61 38.60 1.94 0.90 0.61 0.04 0.20 0.15 0.11
AutoDock4.0 1.94 1.41 1.82 14.90 45.61 2.59 1.35 0.75 0.05
eHiTS6.2 0.00 1.06 1.26 23.25 31.58 1.79 2.93 0.65 0.03
CM4 Glide4.01 1.91 1.39 2.90 2.70 72.41 3.42 10.59 0.82 0.07 0.34 0.19 0.13
AutoDock4.0 1.91 1.39 2.34 12.61 58.62 7.66 0.23 0.78 0.05
eHiTS6.2 1.91 1.74 1.52 16.89 37.93 3.06 1.13 0.65 0.04
AM1 Glide4.01 1.91 0.70 1.31 20.27 32.76 3.83 0.45 0.65 0.03 0.14 0.17 0.22
AutoDock4.0 1.91 1.04 1.03 22.75 25.86 1.91 0.90 0.61 0.03
eHiTS6.2 0.00 0.35 0.97 25.90 24.14 1.42 37.61 0.60 0.03
AM3 Glide4.01 0.00 2.44 2.07 10.36 51.72 2.55 4.73 0.72 0.06 0.28 0.20 0.14
AutoDock4.0 1.91 1.74 2.34 10.81 58.62 2.83 14.64 0.78 0.07
eHiTS6.2 0.00 0.35 1.45 17.57 36.21 1.81 32.43 0.69 0.03