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. Author manuscript; available in PMC: 2014 Aug 15.
Published in final edited form as: Proteins. 2012 Mar 13;80(6):1503–1521. doi: 10.1002/prot.24035

Table V.

The EFs and yields of 57 β2AR antagonists by theoretical models versus three crystal structures with decoys set II (ChEMBL binding decoys plus Schrodinger drug-like decoys). The data from decoys set III (subset of II containing N+ only) were marked in italic.

Structure/Model EF at 1% db EF at 5% db EF at 25% db % db to find 25% seeds Yield at 25% db EFmax % db EFmax occurred ROC AUC AUC at 25% db α=20 BEDROC α=53.6 α=100 Seeds Num. Decoys Num.
2RH1 6.95 7.02 2.47 3.35 61.82 34.75 0.05 0.74 0.08 0.32 0.23 0.21 55 1856
3.72 3.25 2.09 6.96 52.83 13.02 0.14 0.71 0.07 0.31 0.28 0.33 53 637
3D4S 10.42 6.27 2.49 3.29 62.50 34.14 0.05 0.71 0.09 0.33 0.26 0.26 56 1856
5.48 4.02 2.54 5.79 64.81 12.80 0.14 0.70 0.08 0.37 0.37 0.44 54 637
3P0G 5.15 4.90 2.41 4.63 60.71 12.86 0.42 0.72 0.07 0.24 0.18 0.17 56 1865
5.51 3.93 2.35 7.78 59.26 6.43 0.29 0.71 0.06 0.26 0.25 0.28 54 640

CM1 3.51 2.17 1.95 12.47 49.09 7.03 0.26 0.64 0.04 0.14 0.10 0.10 55 1878
1.88 1.88 1.57 16.21 39.62 4.38 0.43 0.61 0.03 0.17 0.17 0.18 53 644
CM2 6.68 4.60 2.28 5.25 57.14 35.05 0.05 0.74 0.08 0.28 0.22 0.23 56 1907
4.89 3.26 2.12 9.80 53.70 13.04 0.14 0.71 0.06 0.28 0.30 0.35 54 650
CM3 3.57 2.50 1.45 11.42 36.36 5.49 0.66 0.58 0.04 0.15 0.11 0.10 55 1906
1.66 2.15 1.50 14.94 37.74 2.95 2.56 0.59 0.04 0.18 0.15 0.13 53 650
CM4 0.00 1.77 0.98 22.67 25.00 1.84 3.87 0.52 0.03 0.08 0.03 0.01 56 1907
0.00 1.81 1.10 21.31 27.78 1.92 8.66 0.55 0.03 0.12 0.06 0.02 54 650
AM1 1.75 2.48 0.84 27.46 21.43 5.84 0.31 0.44 0.03 0.12 0.09 0.08 56 1907
6.52 1.96 0.89 28.84 22.22 6.52 1.14 0.43 0.03 0.18 0.23 0.28 54 650
AM3 0.00 1.05 1.84 17.01 46.43 1.85 24.15 0.64 0.03 0.08 0.04 0.02 56 1907
1.63 1.41 1.92 16.05 48.15 2.37 1.56 0.68 0.03 0.15 0.12 0.10 54 650