Table 2. Comparison of complete PacBio EC958 genome with draft 454 EC958 genome.
| Variant | 454 contig information2 | |||||||
| Position1 | PacBio | 454 | SE15 | Name | Position | Length | Genomic context | Comment3 |
| 786693 | . | A | . | 00007 | 131223 | 131239 | Intergenic (EC958_0852 and EC958_0854) | Homopolymeric tract |
| 955837–957967 | N/A | N/A | N/A | 00011 | 62258 | 64195 | Phi1 phage tail region | 2.8 Kb invertable region in Phi1 phage tail region (2 substitutions/20 indels) |
| 985718 | T | . | T | 00014 | 19202 | 34445 | Intergenic (EC958_1049 and EC958_1050) | Homopolymeric tract |
| 1493217 | . | T | T | 00033 | 1143 | 74077 | Tryptophan biosynthesis protein TrpCF (EC958_4924) | 454 variant consistent with SE15 genome |
| 2027391 | A | . | A | 00040 | 28390 | 75386 | Chemotaxis protein CheA (EC958_2110) | Homopolymeric tract |
| 2598139 | A | . | A | 00085 | 32434 | 57547 | Intergenic (EC958_2623 and EC958_4988) | Homopolymeric tract |
| 3098765 | A | . | A | 00073 | 3745 | 4934 | Hypothetical protein (EC958_5038) | Homopolymeric tract |
| 3377055 | . | C | . | 00057 | 28348 | 88502 | Hypothetical protein (EC958_5205) | Homopolymeric tract |
| 4149057 | A | . | A | 00104 | 7234 | 41331 | Type II restriction enzyme (EC958_4083) | Homopolymeric tract |
| 4308872 | T | . | T | 00148 | 3658 | 51318 | Intergenic (EC958_4231 and EC958_4232) | Homopolymeric tract |
| 4380208 | T | . | T | 00146 | 7992 | 42111 | Hypothetical protein (EC958_4927) | Homopolymeric tract |
| 4756303 | A | . | A | 00117 | 4118 | 15191 | Intergenic (EC958_4610 and EC958_4611) | Homopolymeric tract |
| 4762264 | T | . | T | 00117 | 10078 | 15191 | Hypothetical protein (EC958_5122) | Homopolymeric tract |
| 4762871 | A | . | . | 00117 | 10684 | 15191 | Hypothetical protein (EC958_5123) | Homopolymeric tract; 454 variant consistent with SE15 genome |
| 4776778 | A | . | A | 00119 | 7363 | 155673 | Transcriptional activator CadC (EC958_4623) | Homopolymeric tract |
| 4938457 | G | T | G | 00158 | 1028 | 1512 | Transposase DDE domain protein (EC958_5125) | 1.5 Kb repeat region duplicated in pEC958 |
| 4963207–4965562 | N/A | N/A | N/A | 00105 | 1144 | 3727 | Repeat region in GI-LeuX | 3.7 Kb repeat region duplicated in GI-SelC (11 substitutions/4 indels) |
1
Nucleotide position (or range) in complete PacBio EC958 genome.
2
Name, position of variant and length of 454 contig from draft 454 assembly.
3
“Homopolymeric tract” indicates that variant falls within tract of 5 or more nucleotides of same type.