Table 2. QTL detected for FL, FD and FS using the merged data from two locations of the F2 population from the cross ‘PS’ × PI124112.
Trait | LG | QTL namea | Flanking markers | Interval size (cM) | LOD score | a b | d b | d/[a]b | R2c | Homologue QTL IDa | Homologue published QTLd | Referencee |
FL | II | flqs2.1 | CMPSNP431-ECM61 | 38.4 | 8.44 | 3.06 | 2.29 | 0.75 | 0.16 | flqn2.1 | fl2.1 | [54] |
FL | IIIb | flqs3b.1 | ECM205-CMPSNP998 | 12.9 | 2.92 | + | 0.05 | flqc3.5 | 3.5 | [14] | ||
FL | VIa | flqs6a.1 | ECM52-CMTCN41 | 69.1 | 9.56 | + | 0.11 | flqc6.4 | 6.4 | [14] | ||
FL | VIII | flqs8.1 | GCM241-PSI_25-H03 | 23.3 | 16.85 | −4.95 | −1.71 | −0.35 | 0.34 | flqc8.3 | 8.3 | [14] |
flqn8.1 | fl8.1 | [54] | ||||||||||
FL | Xb | flqs10b.1 | CMPSNP671-CMPSNP665 | 31.6 | 3.02 | – | 0.04 | – | – | – | ||
FD | IIIa | fdqs3a.1 | CMBR100-AI_18-E05 | 25.6 | 2.80 | – | 0.11 | – | – | – | ||
FD | XII | fdqs12.1 | ECM67-CMTCN14 | 52 | 3.47 | −1.03 | −0.17 | −0.17 | 0.11 | fdqi12.1 | fw6.10 | [65] |
FS | II | fsqs2.1 | CMPSNP431-AluICAPS | 16.9 | 6.74 | 0.27 | 0.20 | 0.75 | 0.17 | fsqj2.1 | fs2.3 | [15] |
fsqq2.1 | fs2.2 | [12] | ||||||||||
fsqn2.1 | fsh2.1 | [54] | ||||||||||
FS | VIII | fsqs8.1 | GCM241-PSI_25-H03 | 23.3 | 14.85 | −0.50 | −0.16 | −0.32 | 0.41 | fsqc8.3 | 8.1 in | [14] |
fsqn8.1 | fsh8.1 | [54] | ||||||||||
FS | XII | fsqs12.1 | AI_35-A08-CMPSNP361 | 53.1 | 3.61 | 0.15 | 0.03 | 0.21 | 0.03 | fsqa12.1 | fs11.1 | [13] |
fsqp12.1 | fs12.1 | [12] | ||||||||||
fsqc12.1 | 12.1 | [14] |
FL: Fruit Length; FD: Fruit Diameter; FS: Fruit Shape.
Nomenclature according to [48].
Only calculated for QTL in which the whole population was genotyped with the strongest linked marker(s); for the rest, only the sign is shown.
When possible, calculated using the data coming the whole population genotyped with the strongest linked marker(s); for the rest, the value obtained by the QTL analysis using the selective genotyping subset of samples is shown.
Nomenclature according to the authors that originally identified the QTL.